Evidence map›Paper›PMID 22520838›Full record

ArticleVirology2012

Effects of sequence changes in the HIV-1 gp41 fusion peptide on CCR5 inhibitor resistance.

Cleo G Anastassopoulou, Thomas J Ketas, Rogier W Sanders, Per Johan Klasse, John P Moore

Abstract read
In one paragraph

Article in Virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. HIV Genome-Wide Protein Associations: a Review of 30 Years of Research.Microbiology and molecular biology reviews : MMBR · 2016
    Pooled it
  2. 2022 update of the drug resistance mutations in HIV-1.Topics in antiviral medicine · 2022
    Article
  3. 2019 update of the drug resistance mutations in HIV-1.Topics in antiviral medicine · 2019
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Cleo G AnastassopoulouDepartment of Microbiology and Immunology, Weill Medical College of Cornell University, 1300 York Avenue, New York, NY 10065, USA.
Thomas J Ketas
Rogier W Sanders
Per Johan Klasse
John P Moore

Funding

SECOND RECEPTORS FOR PRIMATE IMMUNODEFICIENCY VIRUSESR01AI041420 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI MOORE, JOHN P · 1997 to 2015
$7.3M
NIAID NIH HHS R01 AI041420NIAID NIH HHS R01AI41420
6 · The paper itself

Abstract

A rare pathway of HIV-1 resistance to small molecule CCR5 inhibitors such as Vicriviroc (VCV) involves changes solely in the gp41 fusion peptide (FP). Here, we show that the G516V change is critical to VCV resistance in PBMC and TZM-bl cells, although it must be accompanied by either M518V or F519I to have a substantial impact. Modeling VCV inhibition data from the two cell types indicated that G516V allows both double mutants to use VCV-CCR5 complexes for entry. The model further identified F519I as an independent determinant of preference for the unoccupied, high-VCV affinity form of CCR5. From inhibitor-free reversion cultures, we also identified a substitution in the inner domain of gp120, T244A, which appears to counter the resistance phenotype created by the FP substitutions. Examining the interplay of these changes will enhance our understanding of Env complex interactions that influence both HIV-1 entry and resistance to CCR5 inhibitors.

Indexed as

CCR5 Receptor AntagonistsDrug Resistance, ViralMutation, MissenseAmino Acid SequenceAmino Acid SubstitutionAnti-HIV AgentsCell LineHIV-1HIV Envelope Protein gp41HIV InfectionsHumansMolecular Sequence DataPiperazinesPyrimidinesReceptors, CCR5Sequence AlignmentAnti-HIV AgentsCCR5 Receptor AntagonistsHIV Envelope Protein gp41PiperazinesPyrimidinesReceptors, CCR5vicriviroc

Identifiers

PMID22520838
PMCPMC3353024

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.