Evidence map›Paper›PMID 22520751›Full record

ArticleChemistry & biology2012

Structure-based design of supercharged, highly thermoresistant antibodies.

Aleksandr E Miklos, Christien Kluwe, Bryan S Der, Supriya Pai, Aroop Sircar, Randall A Hughes, Monica Berrondo, Jianqing Xu, Vlad Codrea, Patricia E Buckley and 9 more

Abstract read
In one paragraph

Article in Chemistry & biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Analytical Method for Experimental Validation of Computer-Designed Antibody.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Aleksandr E MiklosCenter for Systems and Synthetic Biology, University of Texas at Austin, Austin, TX 78712, USA.
Christien Kluwe
Bryan S Der
Supriya Pai
Aroop Sircar
Randall A Hughes
Monica Berrondo
Jianqing Xu
Vlad Codrea
Patricia E Buckley
Alena M Calm
Heather S Welsh
Candice R Warner
Melody A Zacharko
James P Carney
Jeffrey J Gray
George Georgiou
Brian Kuhlman
Andrew D Ellington

Funding

Prediction of the Structure of Therapeutic Antibodies with their AntigensR01GM078221 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI GRAY, JEFFREY J · 2006 to 2020
$4.0M
NIGMS NIH HHS R01 GM078221
6 · The paper itself

Abstract

Mutation of surface residues to charged amino acids increases resistance to aggregation and can enable reversible unfolding. We have developed a protocol using the Rosetta computational design package that "supercharges" proteins while considering the energetic implications of each mutation. Using a homology model, a single-chain variable fragment antibody was designed that has a markedly enhanced resistance to thermal inactivation and displays an unanticipated ≈30-fold improvement in affinity. Such supercharged antibodies should prove useful for assays in resource-limited settings and for developing reagents with improved shelf lives.

Indexed as

Hydrogen BondingProtein EngineeringProtein FoldingProtein Structure, TertiarySingle-Chain AntibodiesSoftwareTemperatureSingle-Chain Antibodies

Identifiers

PMID22520751
PMCPMC5583727

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.