Evidence map›Paper›PMID 22520389›Full record

ArticleMolecular oral microbiology2012

Role of the Porphyromonas gingivalis extracytoplasmic function sigma factor, SigH.

S S Yanamandra, S S Sarrafee, C Anaya-Bergman, K Jones, J P Lewis

Abstract readComparative Study
In one paragraph

Article in Molecular oral microbiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.6field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 36 citations in OpenAlex.

  1. The survival status ofJournal of oral microbiology · 2026
    Review
  2. Article
  3. TheFrontiers in cellular and infection microbiology · 2025
    Article
  4. Review
  5. Article
  6. Article
  7. Mechanisms of Action of Non-Canonical ECF Sigma Factors.International journal of molecular sciences · 2022
    Review
  8. Article
  9. Insertional Inactivation ofMicroorganisms · 2021
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

S S YanamandraThe Philips Institute of Oral and Craniofacial Molecular Biology, Virginia Commonwealth University, Richmond, VA 23298-0566, USA.
S S Sarrafee
C Anaya-Bergman
K Jones
J P Lewis
Virginia Commonwealth University · US

Funding

Virulence factors of periodontopathogensR01DE018039 · NIDCR · VIRGINIA COMMONWEALTH UNIVERSITY · PI LEWIS, JANINA P · 2007 to 2011
$1.6M
Molecular Basis of Oral Microbial AdhesionR01DE016124 · NIDCR · VIRGINIA COMMONWEALTH UNIVERSITY · PI LEWIS, JANINA P · 2005 to 2008
$1.1M
Small non-coding RNAs in Porphyromonas gingivalisR21DE019005 · NIDCR · VIRGINIA COMMONWEALTH UNIVERSITY · PI HOLMES, WALTER M, LEWIS, JANINA P · 2009 to 2010
$421k
NIDCR NIH HHS 5R01DE016124NIDCR NIH HHS 5R21DE019005NIDCR NIH HHS R01 DE016124NIDCR NIH HHS R01 DE018039NIDCR NIH HHS R01DE018039NIDCR NIH HHS R21 DE019005
6 · The paper itself

Abstract

Little is known about the regulatory mechanisms that allow Porphyromonas gingivalis to survive in the oral cavity. Here we characterize the sigma (σ) factor SigH, one of six extracytoplasmic function (ECF) σ factors encoded in the P. gingivalis genome. Our results indicate that sigH expression is upregulated by exposure to molecular oxygen, suggesting that sigH plays a role in adaptation of P. gingivalis to oxygen. Furthermore, several genes involved in oxidative stress protection, such as sod, trx, tpx, ftn, feoB2 and the hemin uptake hmu locus, are downregulated in a mutant deficient in SigH designated as V2948. ECF σ consensus sequences were identified upstream of the transcriptional start sites of these genes, consistent with the SigH-dependent regulation of these genes. Growth of V2948 was inhibited in the presence of 6% oxygen when compared with the wild-type W83 strain, whereas in anaerobic conditions both strains were able to grow. In addition, reduced growth of V2948 was observed in the presence of peroxide and the thiol-oxidizing reagent diamide when compared with the W83 strain. The SigH-deficient strain V2948 also exhibited reduced hemin uptake, consistent with the observed reduced expression of genes involved in hemin uptake. Finally, survival of V2948 was reduced in the presence of host cells compared with the wild-type W83 strain. Collectively, our studies demonstrate that SigH is a positive regulator of gene expression required for survival of the bacterium in the presence of oxygen and oxidative stress, hemin uptake and virulence.

Indexed as

Bacterial ProteinsBacteriological TechniquesChromosome MappingConsensus SequenceDiamideGene Expression Regulation, BacterialHeminHumansMicrobial ViabilityMouthMutationOxidantsOxidative StressOxygenPeroxidesPorphyromonas gingivalisBacterial ProteinsDiamideHeminOxidantsOxygenPeroxidesSigH protein, bacteriaSigma FactorSulfhydryl Reagents

Identifiers

PMID22520389
PMCPMC3335748
OpenAlexW1833525717

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.