Evidence map›Paper›PMID 22519358›Full record

ArticleIET systems biology2012

Spatial localisation of chaperone distribution in the endoplasmic reticulum of yeast.

M Griesemer, C Young, A Robinson, L Petzold

Abstract read
In one paragraph

Article in IET systems biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

M GriesemerDepartment of Computer Science, University of California, Santa Barbara, CA, USA.
C Young
A Robinson
L Petzold
University of California, Santa Barbara · USUniversity of Delaware · US

Funding

Stochastic Modeling of Protein Interactions in the ERR01GM075297 · NIGMS · UNIVERSITY OF DELAWARE · PI ROBINSON, ANNE SKAJA · 2005 to 2008
$914k
NIGMS NIH HHS GM07529NIGMS NIH HHS R01 GM075297
6 · The paper itself

Abstract

In eukaryotes, the endoplasmic reticulum (ER) serves as the first membrane-enclosed organelle in the secretory pathway, with functions including protein folding, maturation and transport. Molecular chaperones, of the Hsp70 family of proteins, participate in assisting these processes and are essential to cellular function and survival. BiP is a resident Hsp70 chaperone in the ER of Saccharomyces cerevisiae. In this study the authors have created a partial differential equation model to examine how BiP interacts with the membrane-bound co-chaperone Sec63 in translocation, a process in which BiP assists in guiding a nascent protein into the ER lumen. It has been found that when Sec63 participates in translocation through localisation at the membrane, the spatial distribution of BiP is inhomogeneous, with more BiP at the surface. When translocation is inhibited through a disabling of Sec63's membrane tether, the concentration of BiP throughout the ER becomes homogeneous. The computational simulations suggest that Sec63's localisation and the resulting binding to BiP near the membrane surface of the ER enable a heterogeneous distribution of BiP within the ER, and may facilitate BiP's role in translocation. [Includes supplementary material].

Indexed as

Models, BiologicalEndoplasmic ReticulumFungal ProteinsHeat-Shock ProteinsHSP70 Heat-Shock ProteinsMembrane Transport ProteinsProtein TransportSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsFungal ProteinsHeat-Shock ProteinsHSP70 Heat-Shock ProteinsKAR2 protein, yeastMembrane Transport ProteinsSaccharomyces cerevisiae ProteinsSEC63 protein, S cerevisiae

Identifiers

PMID22519358
PMCPMC4564256
OpenAlexW1970255791

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.