Evidence map›Paper›PMID 22517853›Full record

ArticleScience (New York, N.Y.)2012

Oxidation of the guanine nucleotide pool underlies cell death by bactericidal antibiotics.

James J Foti, Babho Devadoss, Jonathan A Winkler, James J Collins, Graham C Walker

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 274 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
274citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

274 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Drug-resistantClinical microbiology reviews · 2025
    Pooled it
  2. Trial
  3. Trial
  4. Article
  5. Review
  6. Host methylglyoxal activates theProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Usnic Acid Derivatives as Inhibitors ofInternational journal of molecular sciences · 2026
    Article
  13. Review
  14. Article
  15. Investigating the cardioprotective effects ofBiochemistry and biophysics reports · 2025
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

214 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

James J FotiDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Babho Devadoss
Jonathan A Winkler
James J Collins
Graham C Walker

Funding

MUTAGENESIS AND REPAIR OF DNAR01CA021615 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI WALKER, GRAHAM C · 1985 to 2019
$6.5M
A Network Biology Approach to Antibiotic Action and Bacterial Defense MechanismsDP1OD003644 · OD · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI COLLINS, JAMES J · 2007 to 2011
$4.1M
Regulation of the E. coli Y-family polymearse DinBF32GM079885 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI FOTI, JAMES J · 2008 to 2009
$97k
Howard Hughes Medical InstituteNCI NIH HHS R01 CA021615NIEHS NIH HHS P30 ES002019NIGMS NIH HHS F32 GM079885NIH HHS DP1 OD003644
6 · The paper itself

Abstract

A detailed understanding of the mechanisms that underlie antibiotic killing is important for the derivation of new classes of antibiotics and clinically useful adjuvants for current antimicrobial therapies. Our efforts to understand why DinB (DNA polymerase IV) overproduction is cytotoxic to Escherichia coli led to the unexpected insight that oxidation of guanine to 8-oxo-guanine in the nucleotide pool underlies much of the cell death caused by both DinB overproduction and bactericidal antibiotics. We propose a model in which the cytotoxicity of beta-lactams and quinolones predominantly results from lethal double-strand DNA breaks caused by incomplete repair of closely spaced 8-oxo-deoxyguanosine lesions, whereas the cytotoxicity of aminoglycosides might additionally result from mistranslation due to the incorporation of 8-oxo-guanine into newly synthesized RNAs.

Indexed as

AmpicillinAnti-Bacterial AgentsDeoxyguanine NucleotidesDNA, BacterialDNA Breaks, Double-StrandedDNA-Directed DNA PolymeraseDNA GlycosylasesDNA Polymerase betaDNA Polymerase IDNA Polymerase IIEscherichia coliEscherichia coli ProteinsGuanineGuanine NucleotidesHydroxyl RadicalKanamycin8-hydroxyguanine8-oxodeoxyguanosine triphosphateAmpicillinAnti-Bacterial AgentsDeoxyguanine NucleotidesDinB protein, E coliDNA, BacterialDNA-Directed DNA PolymeraseDNA GlycosylasesDNA Polymerase betaDNA Polymerase IDNA Polymerase IIDNA polymerase V, E coliEscherichia coli ProteinsGuanineGuanine NucleotidesHydroxyl RadicalKanamycinmutT protein, E colimutY adenine glycosylaseNorfloxacinpolB protein, E coliPyrophosphatasesRNA, Bacterial

Identifiers

PMID22517853
PMCPMC3357493

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.