Evidence map›Paper›PMID 22517741›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Tandem mass spectrometry identifies many mouse brain O-GlcNAcylated proteins including EGF domain-specific O-GlcNAc transferase targets.

Joshua F Alfaro, Cheng-Xin Gong, Matthew E Monroe, Joshua T Aldrich, Therese R W Clauss, Samuel O Purvine, Zihao Wang, David G Camp, Jeffrey Shabanowitz, Pamela Stanley and 4 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 177 papers.

0numbers the graph read from it
0cells of the map it votes in
177citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

177 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Glycan-related genes and genetic disorders.Journal of human genetics · 2026
    Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Ultradeep O-GlcNAc proteomics reveals widespread O-GlcNAcylation on tyrosine residues of proteins.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  15. Review
  16. Posttranslational Modifications ofPharmacological reviews · 2024
    Review
  17. Article
  18. Review
  19. Heliyon · 2024
    Article
  20. Review

117 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Joshua F AlfaroPacific Northwest National Laboratory, Richland, WA 99352, USA.
Cheng-Xin Gong
Matthew E Monroe
Joshua T Aldrich
Therese R W Clauss
Samuel O Purvine
Zihao Wang
David G Camp
Jeffrey Shabanowitz
Pamela Stanley
Gerald W Hart
Donald F Hunt
Feng Yang
Richard D Smith

Funding

WORKSHOP AND TRAINING ACTIVITIESP41RR018522 · NCRR · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI SMITH, RICHARD D · 2003 to 2011
$25.1M
Equipment Supplement Request for a Research Resource for Ultra-sensitive High Throughput ProteomicsP41GM103493 · NIGMS · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI SMITH, RICHARD D · 2012 to 2022
$22.6M
PROTEIN SEQUENCING BY TANDEM MASS SPECTROMETRYR01GM037537 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI HUNT, DONALD F · 1987 to 2023
$17.8M
Shared Resource CoresP01HL107153 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI HART, GERALD WARREN · 2011 to 2017
$16.8M
JHU-UMD Diabetes Research CenterP30DK079637 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI AHIMA, REXFORD S. · 2013 to 2017
$9.7M
ROLE OF CELL-SURFACE SIALYLATION IN TUMOR METASTASISR01CA042486 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI HART, GERALD WARREN · 1986 to 2013
$4.9M
O-GlcNAcylation of tau: glucose metabolism & neurodegenR01AG027429 · NIA · INSTITUTE FOR BASIC RES IN DEV DISABIL · PI GONG, CHENG-XIN · 2006 to 2010
$1.3M
Role of O-GlcNAcylation in Phosphorylation and Function of NeurofilamentsR03TW008123 · FIC · INSTITUTE FOR BASIC RES IN DEV DISABIL · PI GONG, CHENG-XIN · 2009 to 2011
$173k
FIC NIH HHS R03 TW008123FIC NIH HHS TW008123NCI NIH HHS R01 CA042486NCI NIH HHS R01 CA42486NCRR NIH HHS 5P41RR018522-10NCRR NIH HHS P41 RR018522NCRR NIH HHS RR018522NHLBI NIH HHS N01-HV-00240NHLBI NIH HHS P01 HL107153NHLBI NIH HHS P01HL107153NIA NIH HHS AG027429NIA NIH HHS R01 AG027429NIDDK NIH HHS P30 DK079637NIGMS NIH HHS 8 P41 GM103493-10NIGMS NIH HHS GM 037537NIGMS NIH HHS P41 GM103493NIGMS NIH HHS R01 GM037537PHS HHS R01 36434
6 · The paper itself

Abstract

O-linked N-acetylglucosamine (O-GlcNAc) is a reversible posttranslational modification of Ser and Thr residues on cytosolic and nuclear proteins of higher eukaryotes catalyzed by O-GlcNAc transferase (OGT). O-GlcNAc has recently been found on Notch1 extracellular domain catalyzed by EGF domain-specific OGT. Aberrant O-GlcNAc modification of brain proteins has been linked to Alzheimer's disease (AD). However, understanding specific functions of O-GlcNAcylation in AD has been impeded by the difficulty in characterization of O-GlcNAc sites on proteins. In this study, we modified a chemical/enzymatic photochemical cleavage approach for enriching O-GlcNAcylated peptides in samples containing ∼100 μg of tryptic peptides from mouse cerebrocortical brain tissue. A total of 274 O-GlcNAcylated proteins were identified. Of these, 168 were not previously known to be modified by O-GlcNAc. Overall, 458 O-GlcNAc sites in 195 proteins were identified. Many of the modified residues are either known phosphorylation sites or located proximal to known phosphorylation sites. These findings support the proposed regulatory cross-talk between O-GlcNAcylation and phosphorylation. This study produced the most comprehensive O-GlcNAc proteome of mammalian brain tissue with both protein identification and O-GlcNAc site assignment. Interestingly, we observed O-β-GlcNAc on EGF-like repeats in the extracellular domains of five membrane proteins, expanding the evidence for extracellular O-GlcNAcylation by the EGF domain-specific OGT. We also report a GlcNAc-β-1,3-Fuc-α-1-O-Thr modification on the EGF-like repeat of the versican core protein, a proposed substrate of Fringe β-1,3-N-acetylglucosaminyltransferases.

Indexed as

AcetylglucosamineAmino Acid SequenceAnimalsBinding SitesBrainCell MembraneCell NucleusCytoplasmEpidermal Growth FactorGlycoproteinsGlycosylationMiceMolecular Sequence DataN-AcetylglucosaminyltransferasesOrganellesPeptidesAcetylglucosamineEpidermal Growth FactorGlycoproteinsN-AcetylglucosaminyltransferasesO-GlcNAc transferasePeptidesProteome

Identifiers

PMID22517741
PMCPMC3358849

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.