Evidence map›Paper›PMID 22516899›Full record

ArticleCytogenetic and genome research2012

Copy number changes on the X chromosome in women with and without highly skewed X-chromosome inactivation.

V Jobanputra, B Levy, A Kinney, S Brown, M Shirazi, C Yu, J Kline, D Warburton

Open access · bronzeAbstract read
In one paragraph

Article in Cytogenetic and genome research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.8field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

V JobanputraDepartment of Pathology, Mailman School of Public Health, Columbia University, New York, NY 10032, USA. vj2004@columbia.edu
B Levy
A Kinney
S Brown
M Shirazi
C Yu
J Kline
D Warburton
Columbia University · USPediatrics and Genetics · USUniversity of Vermont · US

Funding

CTSA: K12 COMPONENTKL2RR024157 · NCRR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GINSBERG, HENRY N · 2006 to 2011
$8.9M
Skewed X Inactivation and Reproductive LossR01HD042745 · NICHD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI WARBURTON, DOROTHY P. · 2002 to 2006
$2.3M
Trisomy and ovarian age: An epidemiologic studyR01HD053814 · NICHD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI KLINE, JENNIE KATHERINE · 2008 to 2010
$1.0M
NCRR NIH HHS KL2 RR024157NCRR NIH HHS KL2RR024157NICHD NIH HHS R01 HD 042725NICHD NIH HHS R01 HD042745NICHD NIH HHS R01 HD 053814NICHD NIH HHS R01 HD053814
6 · The paper itself

Abstract

aimTo test the hypothesis that microdeletions or microduplications below the resolution of a standard karyotype may be a significant cause of highly skewed X-inactivation (HSXI) in women without a cytogenetically detected X-chromosome anomaly.

methodsCases were women with HSXI, defined as ≥85% of cells in a blood sample with the same active allele at the HUMARA locus. The skewing in controls ranged from 50 to <75%. We performed an SNP microarray analysis using the Affymetrix 6.0 platform for 45 cases and 45 controls.

resultsCases and controls did not differ in the frequency of X-chromosome copy number changes ≥100 kb or in the frequency of copy number changes that contained genes. However, one woman with HSXI >90% in blood and left and right buccal smears had a 5.5-Mb deletion in Xp22.2p22.1. This deletion could affect the viability of male conceptions and may have led to the dysmorphology found in female carriers.

conclusionHSXI in a blood sample is rarely due to X-chromosome copy number changes detectable by microarray.

Indexed as

Gene DosageX Chromosome InactivationAbortion, SpontaneousAdultCase-Control StudiesChromosomes, Human, XFemaleHumansInfant, NewbornMaleOligonucleotide Array Sequence AnalysisPolymorphism, Single NucleotidePregnancyReceptors, AndrogenTrisomyAR protein, humanReceptors, Androgen

Identifiers

PMID22516899
PMCPMC4315938
OpenAlexW2054337217

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.