Evidence map›Paper›PMID 22515735›Full record

ArticleMolecular microbiology2012

The quorum-sensing protein TraR of Agrobacterium tumefaciens is susceptible to intrinsic and TraM-mediated proteolytic instability.

Esther D Costa, Yunrong Chai, Stephen C Winans

Abstract read
In one paragraph

Article in Molecular microbiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Microorganisms · 2021
    Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Esther D CostaDepartment of Microbiology, Cornell University, Ithaca, NY 14850, USA.
Yunrong Chai
Stephen C Winans
Cornell University · US

Funding

INTERACTIONS BETWEEN AGROBACTERIUM AND HOST PLANTSR01GM042893 · NIGMS · CORNELL UNIVERSITY ITHACA · PI WINANS, STEPHEN C. · 1994 to 2010
$4.1M
INTERACTIONS BETWEEN AGROBACTERIUM AND HOST PLANTSR29GM042893 · NIGMS · CORNELL UNIVERSITY ITHACA · PI WINANS, STEPHEN C. · 1989 to 1993
–
NIGMS NIH HHS GM42893NIGMS NIH HHS R01 GM042893
6 · The paper itself

Abstract

TraR of Agrobacterium tumefaciens is a LuxR-type transcription factor that regulates genes required for replication and conjugation of the tumour-inducing plasmid. TraR binds the pheromone 3-oxo-octanoylhomoserine lactone (OOHL) and requires this molecule for folding into a protease-resistant, soluble conformation. Even after binding to OOHL, TraR is degraded at readily detectable rates. Here we show that the N-terminal domain of TraR, which binds OOHL, is more resistant to degradation than the full length protein, suggesting that sites on the C-terminal DNA binding domain [TraR(170-234)] enhance protein turnover. A fusion between GFP and TraR(170-234) was poorly fluorescent, and truncations of this fusion protein allowed us to identify residues in this domain that contribute to protein degradation. TraR activity was previously shown to be inhibited by the antiactivator TraM. These proteins form 2:2 complexes that fail to bind DNA sequences. Here we show that TraM sharply decreased the accumulation of TraR in whole cells, indicating that TraM facilitates proteolysis of TraR. The TraM component of these complexes is spared from proteolysis, and could therefore act catalytically.

Indexed as

Gene Expression Regulation, BacterialQuorum SensingAcyl-ButyrolactonesAgrobacterium tumefaciensBacterial ProteinsProtein BindingProtein StabilityProteolysisAcyl-ButyrolactonesBacterial ProteinsTraM protein, bacterialTraR protein, Agrobacterium tumefaciens

Identifiers

PMID22515735
PMCPMC3359388
OpenAlexW1906106949

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.