Evidence map›Paper›PMID 22513389›Full record

ArticleThe Journal of general virology2012

The small genome segment of Bunyamwera orthobunyavirus harbours a single transcription-termination signal.

Gjon Blakqori, Anice C Lowen, Richard M Elliott

Open access · hybridAbstract read
In one paragraph

Article in The Journal of general virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Gjon BlakqoriBiomedical Sciences Research Complex, School of Biology, University of St. Andrews, North Haugh, St. Andrews KY16 9ST, Scotland, UK.
Anice C LowenBiomedical Sciences Research Complex, School of Biology, University of St. Andrews, North Haugh, St. Andrews KY16 9ST, Scotland, UK.
Richard M ElliottBiomedical Sciences Research Complex, School of Biology, University of St. Andrews, North Haugh, St. Andrews KY16 9ST, Scotland, UK.
University of St Andrews · GB

Funding

Biotechnology and Biological Sciences Research CouncilMedical Research Council G0800161Wellcome Trust
6 · The paper itself

Abstract

Transcription termination of the mRNA produced from the small (S) genome segment of Bunyamwera orthobunyavirus (BUNV) has previously been mapped to two cis-acting sequences located within the 5' UTR using a virus-free replication assay. The ability of these sequences to terminate transcription was attributed to the shared pentanucleotide motif 3'-UGUCG-5'. Taking advantage of our plasmid-based rescue system to generate recombinant viruses, we re-evaluated the importance of both pentanucleotide motifs as well as that of two other conserved sequences in transcription termination in vivo. Analysis of the 3' ends of positive-stranded viral RNAs derived from the S segment revealed that only the region around the upstream pentanucleotide motif mediated transcription termination in cells infected with wild-type BUNV, leading to mRNAs that were about 100 nt shorter than antigenome RNA. Furthermore, the downstream motif was not recognized in recombinant viruses in which the upstream signal has been disrupted. Our results suggest that in the context of virus infection transcription termination of the BUNV S genome segment mRNA is exclusively directed by the upstream-termination signal. Interestingly, within this region we identified a motif similar to a transcription-termination sequence used by Rift Valley fever phlebovirus.

Indexed as

Terminator Regions, GeneticTranscription, GeneticAnimalsCell LineCricetinaeOrthobunyavirusRNA, MessengerRNA, ViralViral Plaque AssayRNA, MessengerRNA, Viral

Identifiers

PMID22513389
PMCPMC3542733
OpenAlexW2129371073

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.