Evidence map›Paper›PMID 22513376›Full record

ArticleDevelopment (Cambridge, England)2012

The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element.

Thanh Theresa Dinh, Thomas Girke, Xigang Liu, Levi Yant, Markus Schmid, Xuemei Chen

Abstract read
In one paragraph

Article in Development (Cambridge, England), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
9.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 108 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Post-Translational Modifications of TOE3 Regulate Antiviral Defense in Tobacco.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  5. Article
  6. Article
  7. Functional Studies on thePlants (Basel, Switzerland) · 2025
    Article
  8. Article
  9. APETALA2-like Floral Homeotic Protein Up-RegulatingInternational journal of molecular sciences · 2024
    Article
  10. Article
  11. Article
  12. Characterization of TwoPlants (Basel, Switzerland) · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. FaesAP3_1 Regulates theInternational journal of molecular sciences · 2022
    Article
  19. Characterization ofPlants (Basel, Switzerland) · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Thanh Theresa DinhDepartment of Botany and Plant Sciences, Center for Plant Cell Biology, Institute of Integrative Genome Biology, University of California, Riverside, CA 92521, USA.
Thomas Girke
Xigang Liu
Levi Yant
Markus Schmid
Xuemei Chen
University of California, Riverside · US

Funding

Regulation of APETALA2 in flower development in ArabidopsisR01GM061146 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI CHEN, MENG · 2000 to 2022
$6.5M
Howard Hughes Medical InstituteNIGMS NIH HHS GM61146NIGMS NIH HHS R01 GM061146
6 · The paper itself

Abstract

Cell fate specification in development requires transcription factors for proper regulation of gene expression. In Arabidopsis, transcription factors encoded by four classes of homeotic genes, A, B, C and E, act in a combinatorial manner to control proper floral organ identity. The A-class gene APETALA2 (AP2) promotes sepal and petal identities in whorls 1 and 2 and restricts the expression of the C-class gene AGAMOUS (AG) from whorls 1 and 2. However, it is unknown how AP2 performs these functions. Unlike the other highly characterized floral homeotic proteins containing MADS domains, AP2 has two DNA-binding domains referred to as the AP2 domains and its DNA recognition sequence is still unknown. Here, we show that the second AP2 domain in AP2 binds a non-canonical AT-rich target sequence, and, using a GUS reporter system, we demonstrate that the presence of this sequence in the AG second intron is important for the restriction of AG expression in vivo. Furthermore, we show that AP2 binds the AG second intron and directly regulates AG expression through this sequence element. Computational analysis reveals that the binding site is highly conserved in the second intron of AG orthologs throughout Brassicaceae. By uncovering a biologically relevant AT-rich target sequence, this work shows that AP2 domains have wide-ranging target specificities and provides a missing link in the mechanisms that underlie flower development. It also sets the foundation for understanding the basis of the broad biological functions of AP2 in Arabidopsis, as well as the divergent biological functions of AP2 orthologs in dicotyledonous plants.

Indexed as

AGAMOUS Protein, ArabidopsisArabidopsisArabidopsis ProteinsBase SequenceCell DifferentiationChromatin ImmunoprecipitationComputational BiologyElectrophoretic Mobility Shift AssayFlowersGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantHomeodomain ProteinsMolecular Sequence DataNuclear ProteinsSequence Analysis, DNASpecies SpecificityAGAMOUS Protein, ArabidopsisAPETALA2 protein, ArabidopsisArabidopsis ProteinsHomeodomain ProteinsNuclear Proteins

Identifiers

PMID22513376
PMCPMC3347690
OpenAlexW1975846242

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.