Evidence map›Paper›PMID 22511788›Full record

ArticleThe Journal of biological chemistry2012

Dimerization of plant defensin NaD1 enhances its antifungal activity.

Fung T Lay, Grant D Mills, Ivan K H Poon, Nathan P Cowieson, Nigel Kirby, Amy A Baxter, Nicole L van der Weerden, Con Dogovski, Matthew A Perugini, Marilyn A Anderson and 2 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 76 citations in OpenAlex.

  1. Review
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  8. Review
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  12. Membrane-Interacting Antifungal Peptides.Frontiers in cell and developmental biology · 2021
    Review
  13. Article
  14. Histidine-Rich Defensins from theJournal of fungi (Basel, Switzerland) · 2020
    Article
  15. Plant Defensins from a Structural Perspective.International journal of molecular sciences · 2020
    Review
  16. Article
  17. Article
  18. Screening theAntimicrobial agents and chemotherapy · 2019
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Fung T LayDepartment of Biochemistry, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria 3086, Australia.
Grant D Mills
Ivan K H Poon
Nathan P Cowieson
Nigel Kirby
Amy A Baxter
Nicole L van der Weerden
Con Dogovski
Matthew A Perugini
Marilyn A Anderson
Marc Kvansakul
Mark D Hulett
La Trobe University · AUHexima (Australia) · AUAustralian Synchrotron · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The plant defensin, NaD1, from the flowers of Nicotiana alata, is a member of a family of cationic peptides that displays growth inhibitory activity against several filamentous fungi, including Fusarium oxysporum. The antifungal activity of NaD1 has been attributed to its ability to permeabilize membranes; however, the molecular basis of this function remains poorly defined. In this study, we have solved the structure of NaD1 from two crystal forms to high resolution (1.4 and 1.58 Å, respectively), both of which contain NaD1 in a dimeric configuration. Using protein cross-linking experiments as well as small angle x-ray scattering analysis and analytical ultracentrifugation, we show that NaD1 forms dimers in solution. The structural studies identified Lys(4) as critical in formation of the NaD1 dimer. This was confirmed by site-directed mutagenesis of Lys(4) that resulted in substantially reduced dimer formation. Significantly, the reduced ability of the Lys(4) mutant to dimerize correlated with diminished antifungal activity. These data demonstrate the importance of dimerization in NaD1 function and have implications for the use of defensins in agribiotechnology applications such as enhancing plant crop protection against fungal pathogens.

Indexed as

FusariumProtein MultimerizationAnti-Infective AgentsCrystallography, X-RayDefensinsMutagenesis, Site-DirectedNicotianaPlant DiseasesPlant ProteinsProtein Structure, QuaternaryAnti-Infective AgentsDefensinsPlant Proteins

Identifiers

PMID22511788
PMCPMC3370180
OpenAlexW2021081026

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.