Evidence map›Paper›PMID 22511334›Full record

ArticleMetallomics : integrated biometal science2012

YeiR: a metal-binding GTPase from Escherichia coli involved in metal homeostasis.

Crysten E Blaby-Haas, Jessica A Flood, Valérie de Crécy-Lagard, Deborah B Zamble

Open access · bronzeAbstract read
In one paragraph

Article in Metallomics : integrated biometal science, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 52 citations in OpenAlex.

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  16. Systems biology approach to functionally assess theProceedings of the National Academy of Sciences of the United States of America · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Crysten E Blaby-HaasDepartment of Microbiology & Cell Science, University of Florida, PO Box 110700, Gainesville, FL 32611-0700, USA. vcrecy@ufl.edu
Jessica A Flood
Valérie de Crécy-Lagard
Deborah B Zamble
University of Toronto · CAIn-Q-Tel · USUniversity of Florida · US

Funding

Synthesis and function of Queuosine in BacteriaR01GM070641 · NIGMS · UNIVERSITY OF FLORIDA · PI DE CRECY-LAGARD, VALERIE A · 2006 to 2023
$5.3M
NIGMS NIH HHS R01 GM070641NIGMS NIH HHS R01GM70641-01
6 · The paper itself

Abstract

A comparative genomic analysis predicted that many members of the under-characterized COG0523 subfamily of putative P-loop GTPases function in metal metabolism. In this work we focused on the uncharacterized Escherichia coli protein YeiR by studying both the physiology of a yeiR mutant and the in vitro biochemical properties of YeiR expressed as a fusion with the maltose-binding protein (YeiR-MBP). Our results demonstrate that deletion of yeiR increases the sensitivity of E. coli to EDTA or cadmium, and this phenotype is linked to zinc depletion. In vitro, the tagged protein binds several Zn(2+) ions with nanomolar affinity and oligomerizes in the presence of metal. The GTPase activity of YeiR is similar to that measured for other members of the group, but GTP hydrolysis is enhanced by Zn(2+) binding. These results support the predicted connection between the COG0523 P-loop GTPases and roles in metal homeostasis.

Indexed as

CadmiumEdetic AcidEscherichia coliEscherichia coli ProteinsGTP PhosphohydrolasesHomeostasisMutationPhenotypePhylogenyRecombinant Fusion ProteinsZincCadmiumEdetic AcidEscherichia coli ProteinsGTP PhosphohydrolasesRecombinant Fusion ProteinsZinc

Identifiers

PMID22511334
PMCPMC3574555
OpenAlexW1989121941

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.