Evidence map›Paper›PMID 22510988›Full record

ArticleDevelopment (Cambridge, England)2012

Identification of molecular compartments and genetic circuitry in the developing mammalian kidney.

Jing Yu, M Todd Valerius, Mary Duah, Karl Staser, Jennifer K Hansard, Jin-Jin Guo, Jill McMahon, Joe Vaughan, Diane Faria, Kylie Georgas and 15 more

Abstract read
In one paragraph

Article in Development (Cambridge, England), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Cancers · 2022
    Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Prorenin receptor in kidney development.Pediatric nephrology (Berlin, Germany) · 2017
    Review
  17. Article
  18. Does Renal Repair Recapitulate Kidney Development?Journal of the American Society of Nephrology : JASN · 2017
    Review
  19. Article
  20. Ablation of the epithelial-specific splicing factor Esrp1 results in ureteric branching defects and reduced nephron number.Developmental dynamics : an official publication of the American Association of Anatomists · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors.

Jing YuDepartment of Stem Cell and Regenerative Biology, Department of Molecular and Cellular Biology, Harvard Stem Cell Institute, Harvard University, Cambridge, MA 02138, USA.
M Todd Valerius
Mary Duah
Karl Staser
Jennifer K Hansard
Jin-Jin Guo
Jill McMahon
Joe Vaughan
Diane Faria
Kylie Georgas
Bree Rumballe
Qun Ren
A Michaela Krautzberger
Jan P Junker
Rathi D Thiagarajan
Philip Machanick
Paul A Gray
Alexander van Oudenaarden
David H Rowitch
Charles D Stiles
Qiufu Ma
Sean M Grimmond
Timothy L Bailey
Melissa H Little
Andrew P McMahon

Funding

Kidney molecular atlas projectU01DK070181 · NIDDK · HARVARD UNIVERSITY · PI MCMAHON, ANDREW P. · 2004 to 2010
$5.9M
Murine Atlas of Genitourinary DevelopmentU01DK070136 · NIDDK · UNIVERSITY OF QUEENSLAND · PI LITTLE, MELISSA HELEN · 2004 to 2009
$2.2M
The MEME suite of motif-based sequence analysis toolsR01RR021692 · NCRR · UNIVERSITY OF WASHINGTON · PI NOBLE, WILLIAM STAFFORD · 2005 to 2011
$2.1M
GENETIC ORGANIZATION OF RESPIRATORY CIRCUITS IN MOUSE BRAINSTEMR01HL089742 · NHLBI · WASHINGTON UNIVERSITY · PI GRAY, PAUL ANDREW · 2009 to 2013
$2.1M
Molecular and Cellular Regulation of Mammalian Renal Medulla DevelopmentR01DK085080 · NIDDK · UNIVERSITY OF VIRGINIA · PI YU, JING · 2010 to 2014
$1.7M
Molecular Regulation of Nephron FormationF32DK060319 · NIDDK · HARVARD UNIVERSITY · PI VALERIUS, MICHAEL T · 2001 to 2003
$118k
NCRR NIH HHS R01 RR021692NCRR NIH HHS RR021692NHLBI NIH HHS R01 HL089742NIDDK NIH HHS 1R01DK085080NIDDK NIH HHS 5U01 DK070181NIDDK NIH HHS DK070136NIDDK NIH HHS F32 DK060319NIDDK NIH HHS R01 DK085080NIDDK NIH HHS U01 DK070136NIDDK NIH HHS U01 DK070181
6 · The paper itself

Abstract

Lengthy developmental programs generate cell diversity within an organotypic framework, enabling the later physiological actions of each organ system. Cell identity, cell diversity and cell function are determined by cell type-specific transcriptional programs; consequently, transcriptional regulatory factors are useful markers of emerging cellular complexity, and their expression patterns provide insights into the regulatory mechanisms at play. We performed a comprehensive genome-scale in situ expression screen of 921 transcriptional regulators in the developing mammalian urogenital system. Focusing on the kidney, analysis of regional-specific expression patterns identified novel markers and cell types associated with development and patterning of the urinary system. Furthermore, promoter analysis of synexpressed genes predicts transcriptional control mechanisms that regulate cell differentiation. The annotated informational resource (www.gudmap.org) will facilitate functional analysis of the mammalian kidney and provides useful information for the generation of novel genetic tools to manipulate emerging cell populations.

Indexed as

AnimalsGene Expression ProfilingGene Expression Regulation, DevelopmentalIn Situ HybridizationKidneyMiceUrogenital System

Identifiers

PMID22510988
PMCPMC3328182

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.