Evidence map›Paper›PMID 22510768›Full record

ArticlePlant physiology2012

Pattern of deposition of cell wall polysaccharides and transcript abundance of related cell wall synthesis genes during differentiation in barley endosperm.

Sarah M Wilson, Rachel A Burton, Helen M Collins, Monika S Doblin, Filomena A Pettolino, Neil Shirley, Geoffrey B Fincher, Antony Bacic

Open access · greenAbstract read
In one paragraph

Article in Plant physiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
6.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. A Possible Role of the Aleurone Expressed GeneFrontiers in plant science · 2019
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Grass Cell Walls: A Story of Cross-Linking.Frontiers in plant science · 2016
    Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Differential expression of theMolecular breeding : new strategies in plant improvement
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Sarah M WilsonAustralian Research Council Centre of Excellence in Plant Cell Walls, School of Botany, University of Melbourne, Victoria 3010, Australia. wilsonsm@unimelb.edu.au
Rachel A Burton
Helen M Collins
Monika S Doblin
Filomena A Pettolino
Neil Shirley
Geoffrey B Fincher
Antony Bacic
ACT GovernmentAustralian Research Council · AUPlant Industry · AUUniversity of Melbourne · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Immunolabeling, combined with chemical analyses and transcript profiling, have provided a comprehensive temporal and spatial picture of the deposition and modification of cell wall polysaccharides during barley (Hordeum vulgare) grain development, from endosperm cellularization at 3 d after pollination (DAP) through differentiation to the mature grain at 38 DAP. (1→3)-β-D-Glucan appears transiently during cellularization but reappears in patches in the subaleurone cell walls around 20 DAP. (1→3, 1→4)-β-Glucan, the most abundant polysaccharide of the mature barley grain, accumulates throughout development. Arabino-(1-4)-β-D-xylan is deposited significantly earlier than we previously reported. This was attributable to the initial deposition of the polysaccharide in a highly substituted form that was not recognized by antibodies commonly used to detect arabino-(1-4)-β-D-xylans in sections of plant material. The epitopes needed for antibody recognition were exposed by pretreatment of sections with α-L-arabinofuranosidase; this procedure showed that arabino-(1-4)-β-D-xylans were deposited as early as 5 DAP and highlighted their changing structures during endosperm development. By 28 DAP labeling of hetero-(1→4)-β-D-mannan is observed in the walls of the starchy endosperm but not in the aleurone walls. Although absent in mature endosperm cell walls we now show that xyloglucan is present transiently from 3 until about 6 DAP and disappears by 8 DAP. Quantitative reverse transcription-polymerase chain reaction of transcripts for GLUCAN SYNTHASE-LIKE, Cellulose Synthase, and CELLULOSE SYNTHASE-LIKE genes were consistent with the patterns of polysaccharide deposition. Transcript profiling of some members from the Carbohydrate-Active Enzymes database glycosyl transferase families GT61, GT47, and GT43, previously implicated in arabino-(1-4)-β-d-xylan biosynthesis, confirms their presence during grain development.

Indexed as

Cell DifferentiationCell WallEndospermGene Expression ProfilingGenes, PlantGlucansGlucosyltransferasesHordeumImmunohistochemistryMicroscopy, Electron, TransmissionPlant CellsPlant ProteinsPollinationPolysaccharidesReverse Transcriptase Polymerase Chain ReactionRNA, Messengerarabinoxylancallosecellulose synthaseGlucansGlucosyltransferasesPlant ProteinsPolysaccharidesRNA, MessengerRNA, PlantXylansxyloglucan

Identifiers

PMID22510768
PMCPMC3375932
OpenAlexW2045114822

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.