Evidence map›Paper›PMID 22510038›Full record

ArticleBiochemistry2012

Biochemical and structural basis for inhibition of Enterococcus faecalis hydroxymethylglutaryl-CoA synthase, mvaS, by hymeglusin.

D Andrew Skaff, Kasra X Ramyar, William J McWhorter, Michael L Barta, Brian V Geisbrecht, Henry M Miziorko

Abstract read
In one paragraph

Article in Biochemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Biofilm Formation ofMicroorganisms · 2023
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Computational Structural Biology ofFrontiers in oncology · 2018
    Review
  12. Article
  13. Anatomy of the β-branching enzyme of polyketide biosynthesis and its interaction with an acyl-ACP substrate.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  14. Role of VMH ketone bodies in adjusting caloric intake to increased dietary fat content in DIO and DR rats.American journal of physiology. Regulatory, integrative and comparative physiology · 2015
    Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

D Andrew SkaffUniversity of Missouri, Kansas City, MO, USA.
Kasra X Ramyar
William J McWhorter
Michael L Barta
Brian V Geisbrecht
Henry M Miziorko
University of Missouri–Kansas City · US

Funding

Structure Function Analysis of Staphylococcal Complement InhibitorsR01AI071028 · NIAID · UNIVERSITY OF MISSOURI KANSAS CITY · PI GEISBRECHT, BRIAN V · 2008 to 2012
$1.5M
A Mechanism for Shigella Type III Secretion ActivationR21AI090149 · NIAID · OKLAHOMA STATE UNIVERSITY STILLWATER · PI PICKING, WILLIAM D. · 2010 to 2011
$407k
NIAID NIH HHS AI071028NIAID NIH HHS AI090149NIAID NIH HHS R01 AI071028NIAID NIH HHS R21 AI090149
6 · The paper itself

Abstract

Hymeglusin (1233A, F244, L-659-699) is established as a specific β-lactone inhibitor of eukaryotic hydroxymethylglutaryl-CoA synthase (HMGCS). Inhibition results from formation of a thioester adduct to the active site cysteine. In contrast, the effects of hymeglusin on bacterial HMG-CoA synthase, mvaS, have been minimally characterized. Hymeglusin blocks growth of Enterococcus faecalis. After removal of the inhibitor from culture media, a growth curve inflection point at 3.1 h is observed (vs 0.7 h for the uninhibited control). Upon hymeglusin inactivation of purified E. faecalis mvaS, the thioester adduct is more stable than that measured for human HMGCS. Hydroxylamine cleaves the thioester adduct; substantial enzyme activity is restored at a rate that is 8-fold faster for human HMGCS than for mvaS. Structural results explain these differences in enzyme-inhibitor thioester adduct stability and solvent accessibility. The E. faecalis mvaS-hymeglusin cocrystal structure (1.95 Å) reveals virtually complete occlusion of the bound inhibitor in a narrow tunnel that is largely sequestered from bulk solvent. In contrast, eukaryotic (Brassica juncea) HMGCS binds hymeglusin in a more solvent-exposed cavity.

Indexed as

Cloning, MolecularCrystallography, X-RayEnterococcus faecalisEnzyme InhibitorsFatty Acids, UnsaturatedGene Expression Regulation, BacterialGene Expression Regulation, EnzymologicHumansHydroxylamineHydroxymethylglutaryl-CoA SynthaseKineticsLactonesModels, MolecularMolecular StructureProtein BindingX-Ray Diffractionantibiotic 1233AEnzyme InhibitorsFatty Acids, UnsaturatedHydroxylamineHydroxymethylglutaryl-CoA SynthaseLactones

Identifiers

PMID22510038
PMCPMC3431454
OpenAlexW2043732140

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.