Evidence map›Paper›PMID 22509261›Full record

ArticlePloS one2012

Preparation and characterization of the extracellular domain of human Sid-1.

Ashley J Pratt, Robert P Rambo, Pick-Wei Lau, Ian J MacRae

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
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  5. Review
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  11. Movement of regulatory RNA between animal cells.Genesis (New York, N.Y. : 2000) · 2015
    Review
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Ashley J PrattDepartment of Molecular Biology, The Scripps Research Institute, La Jolla, California, United States of America.
Robert P Rambo
Pick-Wei Lau
Ian J MacRae
Scripps Research Institute · USLawrence Berkeley National Laboratory · US

Funding

TRD #3: An automated and streamlined pipeline for in-situ molecular microscopyP41GM103310 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2012 to 2021
$14.7M
WORKSHOPS AND TRAININGP41RR017573 · NCRR · SCRIPPS RESEARCH INSTITUTE, THE · PI CARRAGHER, BRIDGET OLIVIA · 2002 to 2011
$14.2M
Structure and Mechanism of the RISC-loading ComplexR01GM086701 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI MACRAE, IAN JOHN · 2009 to 2013
$1.8M
NCRR NIH HHS P41 RR017573NIGMS NIH HHS GM103310NIGMS NIH HHS P41 GM103310NIGMS NIH HHS R01 GM086701NIGMS NIH HHS R01GM086701
6 · The paper itself

Abstract

In C. elegans, the cell surface protein Sid-1 imports extracellular dsRNA into the cytosol of most non-neuronal cells, enabling systemic spread of RNA interference (RNAi) throughout the worm. Sid-1 homologs are found in many other animals, although for most a function for the protein has not yet been established. Sid-1 proteins are composed of an N-terminal extracellular domain (ECD) followed by 9-12 predicted transmembrane regions. We developed a baculovirus system to express and purify the ECD of the human Sid-1 protein SidT1. Recombinant SidT1 ECD is glycosylated and spontaneously assembles into a stable and discrete tetrameric structure. Electron microscopy (EM) and small angle x-ray scattering (SAXS) studies reveal that the SidT1 ECD tetramer is a compact, puck-shaped globular particle, which we hypothesize may control access of dsRNA to the transmembrane pore. These characterizations provide inroads towards understanding the mechanism of this unique RNA transport system from structural prospective.

Indexed as

AnimalsBaculoviridaeExtracellular SpaceGlycosylationHumansMembrane Transport ProteinsModels, MolecularProtein FoldingProtein MultimerizationProtein Processing, Post-TranslationalProtein Structure, QuaternaryProtein Structure, TertiarySequence Homology, Amino AcidSolubilitySpodopteraMembrane Transport Proteinssystemic RNA Interference-defective-1 transmembrane family member 1, human

Identifiers

PMID22509261
PMCPMC3324469
OpenAlexW2038388342

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.