Evidence map›Paper›PMID 22509013›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Promiscuous restriction is a cellular defense strategy that confers fitness advantage to bacteria.

Kommireddy Vasu, Easa Nagamalleswari, Valakunja Nagaraja

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. Article
  3. Characterization of BisI Homologs.Frontiers in microbiology · 2021
    Article
  4. Review
  5. Low-level expression of the Type II restriction-modification system confers potent bacteriophage resistance in Escherichia coli.DNA research : an international journal for rapid publication of reports on genes and genomes · 2020
    Article
  6. Systematic evasion of the restriction-modification barrier in bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  7. Review
  8. Sampling the mobile gene pool: innovation via horizontal gene transfer in bacteria.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
  9. Article
  10. Anti-Restriction Protein, KlcAFrontiers in cellular and infection microbiology · 2017
    Article
  11. Article
  12. Regulation of genetic flux between bacteria by restriction-modification systems.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Kommireddy VasuDepartment of Microbiology and Cell Biology, Indian Institute of Science, Bangalore 560012, India.
Easa Nagamalleswari
Valakunja Nagaraja

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Most bacterial genomes harbor restriction-modification systems, encoding a REase and its cognate MTase. On attack by a foreign DNA, the REase recognizes it as nonself and subjects it to restriction. Should REases be highly specific for targeting the invading foreign DNA? It is often considered to be the case. However, when bacteria harboring a promiscuous or high-fidelity variant of the REase were challenged with bacteriophages, fitness was maximal under conditions of catalytic promiscuity. We also delineate possible mechanisms by which the REase recognizes the chromosome as self at the noncanonical sites, thereby preventing lethal dsDNA breaks. This study provides a fundamental understanding of how bacteria exploit an existing defense system to gain fitness advantage during a host-parasite coevolutionary "arms race."

Indexed as

Biological EvolutionBacteriophagesDeoxyribonucleases, Type II Site-SpecificDNA Restriction-Modification EnzymesElectrophoresis, Polyacrylamide GelEscherichia coliGenetic FitnessHost-Pathogen InteractionsKlebsiella pneumoniaeOligonucleotidesDeoxyribonucleases, Type II Site-SpecificDNA Restriction-Modification EnzymesGGTACC-specific type II deoxyribonucleasesOligonucleotides

Identifiers

PMID22509013
PMCPMC3356625

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.