Evidence map›Paper›PMID 22509003›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Intrinsic disorder modulates protein self-assembly and aggregation.

Alfonso De Simone, Craig Kitchen, Ann H Kwan, Margaret Sunde, Christopher M Dobson, Daan Frenkel

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed.

  1. Reverse-engineering amyloid strains with generative protein design.bioRxiv : the preprint server for biology · 2026
    Article
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  6. Review
  7. Article
  8. Article
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  11. Article
  12. Article
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  15. Amyloid structures: much more than just a cross-β fold.Current opinion in structural biology · 2020
    Review
  16. The first year.Acta neuropathologica · 2020
    Article
  17. Article
  18. LOXL1 folding in exfoliation glaucoma.Advances in protein chemistry and structural biology · 2019
    Review
  19. Article
  20. Oligomerization Alters Binding Affinity Between Amyloid Beta and a Modulator of Peptide Aggregation.The journal of physical chemistry. C, Nanomaterials and interfaces · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Alfonso De SimoneDivision of Molecular Biosciences, Imperial College London, South Kensington SW7 2AZ, United Kingdom.
Craig Kitchen
Ann H Kwan
Margaret Sunde
Christopher M Dobson
Daan Frenkel

Funding

Medical Research CouncilWellcome Trust
6 · The paper itself

Abstract

Protein molecules have evolved to adopt distinctive and well-defined functional and soluble states under physiological conditions. In some circumstances, however, proteins can self-assemble into fibrillar aggregates designated as amyloid fibrils. In vivo these processes are normally associated with severe pathological conditions but can sometimes have functional relevance. One such example is the hydrophobins, whose aggregation at air-water interfaces serves to create robust protein coats that help fungal spores to resist wetting and thus facilitate their dispersal in the air. We have performed multiscale simulations to address the molecular determinants governing the formation of functional amyloids by the class I fungal hydrophobin EAS. Extensive samplings of full-atom replica-exchange molecular dynamics and coarse-grained simulations have allowed us to identify factors that distinguish aggregation-prone from highly soluble states of EAS. As a result of unfavourable entropic terms, highly dynamical regions are shown to exert a crucial influence on the propensity of the protein to aggregate under different conditions. More generally, our findings suggest a key role that specific flexible structural elements can play to ensure the existence of soluble and functional states of proteins under physiological conditions.

Indexed as

Protein MultimerizationAirAmino Acid SequenceAmyloidBiophysical PhenomenaComputer SimulationEntropyFungal ProteinsModels, MolecularMolecular Dynamics SimulationMolecular Sequence DataNuclear Magnetic Resonance, BiomolecularProtein ConformationProtein Structure, QuaternaryProtein Structure, SecondarySolubilityAmyloidFungal ProteinsWater

Identifiers

PMID22509003
PMCPMC3344965

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.