Evidence map›Paper›PMID 22508104›Full record

ArticleJournal of structural biology2012

Structure and size determination of bacteriophage P2 and P4 procapsids: function of size responsiveness mutations.

Altaira D Dearborn, Pasi Laurinmaki, Preethi Chandramouli, Cynthia M Rodenburg, Sifang Wang, Sarah J Butcher, Terje Dokland

Abstract read
In one paragraph

Article in Journal of structural biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Predicting the capsid architecture of phages from metagenomic data.Computational and structural biotechnology journal · 2022
    Article
  5. High Resolution Structure of the Mature Capsid ofInternational journal of molecular sciences · 2021
    Article
  6. Bacteriophage Technology and Modern Medicine.Antibiotics (Basel, Switzerland) · 2021
    Review
  7. Article
  8. Article
  9. Review
  10. Capsid expansion of bacteriophage T5 revealed by high resolution cryoelectron microscopy.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  11. Review
  12. Article
  13. Article
  14. Convergent evolution of pathogenicity islands in helper cos phage interference.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2016
    Article
  15. Review
  16. Article
  17. Article
  18. Subunit folds and maturation pathway of a dsRNA virus capsid.Structure (London, England : 1993) · 2013
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Altaira D DearbornDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, AL 35294, USA.
Pasi Laurinmaki
Preethi Chandramouli
Cynthia M Rodenburg
Sifang Wang
Sarah J Butcher
Terje Dokland
University of Alabama at Birmingham · USUniversity of Helsinki · FIExperimental Drug Development Centre · SGHarvard University · US

Funding

Structural basis for pathogenicity island mobilization in S. aureusR01AI083255 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI DOKLAND, TERJE · 2009 to 2023
$5.6M
Structure and size determination of S. aureus pathogenicity island capsidsR21AI071982 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI DOKLAND, TERJE · 2007 to 2008
$372k
NIAID NIH HHS R01 AI083255NIAID NIH HHS R21 AI071982
6 · The paper itself

Abstract

Bacteriophage P4 is dependent on structural proteins supplied by a helper phage, P2, to assemble infectious virions. Bacteriophage P2 normally forms an icosahedral capsid with T=7 symmetry from the gpN capsid protein, the gpO scaffolding protein and the gpQ portal protein. In the presence of P4, however, the same structural proteins are assembled into a smaller capsid with T=4 symmetry. This size determination is effected by the P4-encoded protein Sid, which forms an external scaffold around the small P4 procapsids. Size responsiveness (sir) mutants in gpN fail to assemble small capsids even in the presence of Sid. We have produced large and small procapsids by co-expression of gpN with gpO and Sid, respectively, and applied cryo-electron microscopy and three-dimensional reconstruction methods to visualize these procapsids. gpN has an HK97-like fold and interacts with Sid in an exposed loop where the sir mutations are clustered. The T=7 lattice of P2 has dextro handedness, unlike the laevo lattices of other phages with this fold observed so far.

Indexed as

Bacteriophage P2CapsidCryoelectron MicroscopyModels, BiologicalMutationMyoviridaeProtein Structure, SecondaryUltrasonography

Identifiers

PMID22508104
PMCPMC3361666
OpenAlexW1998773331

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.