Evidence map›Paper›PMID 22506731›Full record

ArticleFoodborne pathogens and disease2012

Standardization and international multicenter validation of a PulseNet pulsed-field gel electrophoresis protocol for subtyping Shigella flexneri isolates.

Mariana Pichel, Silvina P Brengi, Kara L F Cooper, Efrain M Ribot, Suleiman Al-Busaidy, Pamela Araya, Jorge Fernández, Tania Ibelli Vaz, Kai Man Kam, Myriam Morcos and 7 more

Abstract readValidation Study
In one paragraph

Article in Foodborne pathogens and disease, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Healthcare (Basel, Switzerland) · 2025
    Article
  2. AnalyzingInfection and drug resistance · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. PulseNet: Entering the Age of Next-Generation Sequencing.Foodborne pathogens and disease · 2019
    Article
  7. Article
  8. PulseNet International: Vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2017
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Mariana PichelInstituto Nacional de Enfermedades Infecciosas, ANLIS "Carlos G. Malbrán," Buenos Aires, Argentina. mpichel@anlis.gov.ar
Silvina P Brengi
Kara L F Cooper
Efrain M Ribot
Suleiman Al-Busaidy
Pamela Araya
Jorge Fernández
Tania Ibelli Vaz
Kai Man Kam
Myriam Morcos
Eva M Nielsen
Celine Nadon
Guillermo Pimentel
Enrique Pérez-Gutiérrez
Peter Gerner-Smidt
Norma Binsztein
Shigella flexneri PulseNet PFGE Protocol Working Group

Funding

Intramural CDC HHS CC999999
6 · The paper itself

Abstract

Shigella flexneri is one of the agents most frequently linked to diarrheal illness in developing countries and often causes outbreaks in settings with poor hygiene or sanitary conditions. Travel is one of the means by which S. flexneri can be imported into developed countries, where this pathogen is not commonly seen. A robust and discriminatory subtyping method is needed for the surveillance of S. flexneri locally and regionally, and to aid in the detection and investigation of outbreaks. The PulseNet International network utilizes standardized pulsed-field gel electrophoresis (PFGE) protocols to carry out laboratory-based surveillance of foodborne pathogens in combination with epidemiologic data. A multicenter validation was carried out in nine PulseNet laboratories located in North and South America, Europe, and Asia, and it demonstrated that a new protocol is highly robust and reproducible for subtyping of S. flexneri. This protocol, already approved for PulseNet laboratories, applies NotI and XbaI as primary and secondary restriction enzymes, respectively, under electrophoresis conditions of initial switch time of 5 s to final switch time of 35 s, at 6 volts/cm.

Indexed as

Bacterial Typing TechniquesDenmarkDeoxyribonucleases, Type II Site-SpecificDNA, BacterialDysentery, BacillaryElectrophoresis, Gel, Pulsed-FieldHong KongMiddle EastNorth AmericaQuality ControlReproducibility of ResultsShigella flexneriSouth AmericaTime FactorsDeoxyribonucleases, Type II Site-SpecificDNA, Bacterialendodeoxyribonuclease XBAIGCGGCCGC-specific type II deoxyribonucleases

Identifiers

PMID22506731
PMCPMC11359307

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.