Evidence map›Paper›PMID 22505456›Full record

ArticleThe Journal of clinical investigation2012

Efficient SIVcpz replication in human lymphoid tissue requires viral matrix protein adaptation.

Frederic Bibollet-Ruche, Anke Heigele, Brandon F Keele, Juliet L Easlick, Julie M Decker, Jun Takehisa, Gerald Learn, Paul M Sharp, Beatrice H Hahn, Frank Kirchhoff

Open access · greenAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
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  8. Evolution toward beta common chain receptor usage links the matrix proteins of HIV-1 and its ancestors to human erythropoietin.Proceedings of the National Academy of Sciences of the United States of America · 2021
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  14. Onward transmission of viruses: how do viruses emerge to cause epidemics after spillover?Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2019
    Review
  15. Article
  16. A glycan shield on chimpanzee CD4 protects against infection by primate lentiviruses (HIV/SIV).Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  17. Derivation of simian tropic HIV-1 infectious clone reveals virus adaptation to a new host.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  18. Article
  19. CD4 receptor diversity in chimpanzees protects against SIV infection.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Frederic Bibollet-RucheDepartment of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6060, USA.
Anke Heigele
Brandon F Keele
Juliet L Easlick
Julie M Decker
Jun Takehisa
Gerald Learn
Paul M Sharp
Beatrice H Hahn
Frank Kirchhoff
University of Alabama · USInstitute of Virology of the Slovak Academy of Sciences · SKScience Applications International Corporation (United States) · USUniversity of Pennsylvania · US

Funding

YNPRC NHP CLINICAL MEDICINE RESIDENCY PROGRAM - SUPPLEMENTP51RR000165 · NCRR · EMORY UNIVERSITY · PI ALTMAN, JOHN DAVID · 1985 to 2011
$114.0M
Virology CoreP30AI027767 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI OLAF KUTSCH · 1988 to 2026
$84.1M
Natural SIV Reservoirs and Human Zoonotic RiskR01AI050529 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2001 to 2022
$6.1M
Molecular Epidemiology and Natural History of SIVcpzR01AI058715 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2004 to 2013
$6.1M
The Role of Matrix Cofactors in SIVcpz ReplicationR21AI080364 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI BIBOLLET-RUCHE, FREDERIC · 2008 to 2009
$388k
NCRR NIH HHS P51 RR000165NCRR NIH HHS RR-000165NIAID NIH HHS P30 AI027767NIAID NIH HHS P30 AI27767NIAID NIH HHS R01 AI050529NIAID NIH HHS R01 AI058715NIAID NIH HHS R01 AI50529NIAID NIH HHS R01 AI58715NIAID NIH HHS R21 AI080364Wellcome Trust 095831
6 · The paper itself

Abstract

SIVs infecting wild-living apes in west central Africa have crossed the species barrier to humans on at least four different occasions, one of which spawned the AIDS pandemic. Although the chimpanzee precursor of pandemic HIV-1 strains must have been able to infect humans, the capacity of SIVcpz strains to replicate in human lymphoid tissues (HLTs) is not known. Here, we show that SIVcpz strains from two chimpanzee subspecies are capable of replicating in human tonsillary explant cultures, albeit only at low titers. However, SIVcpz replication in HLT was significantly improved after introduction of a previously identified human-specific adaptation at position 30 in the viral Gag matrix protein. An Arg or Lys at this position significantly increased SIVcpz replication in HLT, while the same mutation reduced viral replication in chimpanzee-derived CD4(+) T cells. Thus, naturally occurring SIVcpz strains are capable of infecting HLTs, the major site of HIV-1 replication in vivo. However, efficient replication requires the acquisition of a host-specific adaptation in the viral matrix protein. These results identify Gag matrix as a major determinant of SIVcpz replication fitness in humans and suggest a critical role in the emergence of HIV/AIDS.

Indexed as

Virus ReplicationAdaptation, BiologicalAmino Acid SubstitutionAnimalsCells, CulturedGene Products, gagHIV-1Host-Pathogen InteractionsHumansLentivirus InfectionsMutagenesis, Site-DirectedPalatine TonsilPan troglodytesPhylogenySimian Immunodeficiency VirusTissue Culture TechniquesGene Products, gagViral Matrix Proteins

Identifiers

PMID22505456
PMCPMC3336991
OpenAlexW2137950169

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.