Evidence map›Paper›PMID 22504883›Full record

ArticleNature structural & molecular biology2012

Structure of the c(10) ring of the yeast mitochondrial ATP synthase in the open conformation.

Jindrich Symersky, Vijayakanth Pagadala, Daniel Osowski, Alexander Krah, Thomas Meier, José D Faraldo-Gómez, David M Mueller

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Electric Forces and ATP Synthesis.Reviews of physiology, biochemistry and pharmacology · 2025
    Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. ATP synthase FCellular and molecular life sciences : CMLS · 2022
    Review
  11. Cooperation amongeLife · 2022
    Article
  12. ATP Synthase KFunction (Oxford, England) · 2022
    Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Review
  18. Review
  19. Article
  20. Article

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jindrich SymerskyDepartment of Biochemistry and Molecular Biology, Rosalind Franklin University of Medicine and Science, The Chicago Medical School, Chicago, Illinois, USA.
Vijayakanth Pagadala
Daniel Osowski
Alexander Krah
Thomas Meier
José D Faraldo-Gómez
David M Mueller

Funding

Structure Function of the ATP SynthaseR01GM066223 · NIGMS · ROSALIND FRANKLIN UNIV OF MEDICINE &SCI · PI MUELLER, DAVID MICHAEL · 2002 to 2018
$5.3M
NIGMS NIH HHS R01 GM066223NIGMS NIH HHS R01GM66223
6 · The paper itself

Abstract

The proton pore of the F(1)F(o) ATP synthase consists of a ring of c subunits, which rotates, driven by downhill proton diffusion across the membrane. An essential carboxylate side chain in each subunit provides a proton-binding site. In all the structures of c-rings reported to date, these sites are in a closed, ion-locked state. Structures are here presented of the c(10) ring from Saccharomyces cerevisiae determined at pH 8.3, 6.1 and 5.5, at resolutions of 2.0 Å, 2.5 Å and 2.0 Å, respectively. The overall structure of this mitochondrial c-ring is similar to known homologs, except that the essential carboxylate, Glu59, adopts an open extended conformation. Molecular dynamics simulations reveal that opening of the essential carboxylate is a consequence of the amphiphilic nature of the crystallization buffer. We propose that this new structure represents the functionally open form of the c subunit, which facilitates proton loading and release.

Indexed as

Molecular Dynamics SimulationBinding SitesCrystallography, X-RayMitochondrial Proton-Translocating ATPasesProtein ConformationProtein SubunitsProtonsSaccharomyces cerevisiaeF1F0-ATP synthaseMitochondrial Proton-Translocating ATPasesProtein SubunitsProtons

Identifiers

PMID22504883
PMCPMC3343227

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.