Evidence map›Paper›PMID 22504810›Full record

ArticleApplied and environmental microbiology2012

Characterization of the biosynthetic operon for the antibacterial peptide herbicolin in Pantoea vagans biocontrol strain C9-1 and incidence in Pantoea species.

Tim Kamber, Theresa A Lansdell, Virginia O Stockwell, Carol A Ishimaru, Theo H M Smits, Brion Duffy

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Review
  8. Article
  9. Three Phages One Host: Isolation and Characterization ofInternational journal of molecular sciences · 2023
    Article
  10. Article
  11. Review
  12. Article
  13. Opposite Sides ofMicroorganisms · 2022
    Review
  14. Article
  15. Beneficial Effect and Potential Risk ofPlants (Basel, Switzerland) · 2022
    Review
  16. Review
  17. Article
  18. Microorganisms · 2019
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Tim KamberAgroscope Changins-Wädenswil ACW, Plant Protection Division, Wädenswil, Switzerland.
Theresa A Lansdell
Virginia O Stockwell
Carol A Ishimaru
Theo H M Smits
Brion Duffy

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pantoea vagans C9-1 is a biocontrol strain that produces at least two antibiotics inhibiting the growth of Erwinia amylovora, the causal agent of fire blight disease of pear and apple. One antibiotic, herbicolin I, was purified from culture filtrates of P. vagans C9-1 and determined to be 2-amino-3-(oxirane-2,3-dicarboxamido)-propanoyl-valine, also known as N(ß)-epoxysuccinamoyl-DAP-valine. A plasposon library was screened for mutants that had lost the ability to produce herbicolin I. It was shown that mutants had reduced biocontrol efficacy in immature pear assays. The biosynthetic gene cluster in P. vagans C9-1 was identified by sequencing the flanking regions of the plasposon insertion sites. The herbicolin I biosynthetic gene cluster consists of 10 coding sequences (CDS) and is located on the 166-kb plasmid pPag2. Sequence comparisons identified orthologous gene clusters in Pantoea agglomerans CU0119 and Serratia proteamaculans 568. A low incidence of detection of the biosynthetic cluster in a collection of 45 Pantoea spp. from biocontrol, environmental, and clinical origins showed that this is a rare trait among the tested strains.

Indexed as

Anti-Bacterial AgentsBiosynthetic PathwaysErwinia amylovoraGenes, BacterialMalusMultigene FamilyOligopeptidesPantoeaPlant DiseasesPlasmidsPyrusSequence Homology, Nucleic AcidAnti-Bacterial AgentsOligopeptides

Identifiers

PMID22504810
PMCPMC3370561

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.