Evidence map›Paper›PMID 22496870›Full record

ArticlePloS one2012

Differential epigenetic regulation of TOX subfamily high mobility group box genes in lung and breast cancers.

Mathewos Tessema, Christin M Yingling, Marcie J Grimes, Cynthia L Thomas, Yushi Liu, Shuguang Leng, Nancy Joste, Steven A Belinsky

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. The TOX subfamily: all-round players in the immune system.Clinical and experimental immunology · 2022
    Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Tox4 modulates cell fate reprogramming.Journal of cell science · 2019
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Mathewos TessemaLung Cancer Program, Lovelace Respiratory Research Institute, Albuquerque, New Mexico, United States of America.
Christin M Yingling
Marcie J Grimes
Cynthia L Thomas
Yushi Liu
Shuguang Leng
Nancy Joste
Steven A Belinsky
Lovelace Respiratory Research Institute · USUniversity of New Mexico · US

Funding

TARGETING EARLY CHANGES FOR NEW SCREENING STRATEGIESP50CA058184 · NCI · JOHNS HOPKINS UNIVERSITY · PI BAYLIN, STEPHEN B. · 1992 to 2013
$30.5M
TUMOR SUPPRESSOR GENE METHYLATION IN LUNG ADENOCARCINOMAR01ES008801 · NIEHS · LOVELACE BIOMEDICAL & ENVIRONMENTAL RESEARCH INSTITUTE · PI BELINSKY, STEVEN A · 1998 to 2010
$3.9M
Genetic and Epigenetic Biomarkers for SCC of the LungR01ES015262 · NIEHS · LOVELACE BIOMEDICAL & ENVIRONMENTAL RESEARCH INSTITUTE · PI BELINSKY, STEVEN A · 2008 to 2012
$3.4M
NCI NIH HHS P50 CA058184NCI NIH HHS P50 CA58184NIEHS NIH HHS ES015262NIEHS NIH HHS R01 ES008801NIEHS NIH HHS R01ES008801NIEHS NIH HHS R01 ES015262
6 · The paper itself

Abstract

Aberrant cytosine methylation affects regulation of hundreds of genes during cancer development. In this study, a novel aberrantly hypermethylated CpG island in cancer was discovered within the TOX2 promoter. TOX2 was unmethylated in normal cells but 28% lung (n = 190) and 23% breast (n = 80) tumors were methylated. Expression of two novel TOX2 transcripts identified was significantly reduced in primary lung tumors than distant normal lung (p<0.05). These transcripts were silenced in methylated lung and breast cancer cells and 5-Aza-2-deoxycytidine treatment re-expressed both. Extension of these assays to TOX, TOX3, and TOX4 genes that share similar genomic structure and protein homology with TOX2 revealed distinct methylation profiles by smoking status, histology, and cancer type. TOX was almost exclusively methylated in breast (43%) than lung (5%) cancer, whereas TOX3 was frequently methylated in lung (58%) than breast (30%) tumors. TOX4 was unmethylated in all samples and showed the highest expression in normal lung. Compared to TOX4, expression of TOX, TOX2 and TOX3 in normal lung was 25, 44, and 88% lower, respectively, supporting the premise that reduced promoter activity confers increased susceptibility to methylation during lung carcinogenesis. Genome-wide assays revealed that siRNA-mediated TOX2 knockdown modulated multiple pathways while TOX3 inactivation targeted neuronal development and function. Although these knockdowns did not result in further phenotypic changes of lung cancer cells in vitro, the impact on tissue remodeling, inflammatory response, and cell differentiation pathways suggest a potential role for TOX2 in modulating tumor microenvironment.

Indexed as

Epigenesis, GeneticGene Expression Regulation, NeoplasticApoptosis Regulatory ProteinsBase SequenceBreast NeoplasmsCpG IslandsDNA MethylationFemaleHigh Mobility Group ProteinsHMGB ProteinsHumansLungLung NeoplasmsMaleMolecular Sequence DataNeoplasm ProteinsApoptosis Regulatory ProteinsHigh Mobility Group ProteinsHMGB ProteinsNeoplasm ProteinsReceptors, ProgesteroneTox2 protein, humanTOX3 protein, humanTOX4 protein, humanTOX protein, humanTrans-Activators

Identifiers

PMID22496870
PMCPMC3319602
OpenAlexW2015471987

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.