Evidence map›Paper›PMID 22496757›Full record

Trial reportPloS one2012

Single nucleotide polymorphisms in the PRDX3 and RPS19 and risk of HPV persistence and cervical precancer/cancer.

Mahboobeh Safaeian, Allan Hildesheim, Paula Gonzalez, Kai Yu, Carolina Porras, Qizhai Li, Ana Cecilia Rodriguez, Mark E Sherman, Mark Schiffman, Sholom Wacholder and 5 more

Open access · goldAbstract readComparative StudyRandomized Controlled Trial
In one paragraph

Trial report in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed, 1 pooled it
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 1 synthesis or guideline pooled it, 61 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Variations in Genes Encoding Human Papillomavirus Binding Receptors and Susceptibility to Cervical Precancer.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2023
    Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Polymorphism Located in the Upstream Region of theJournal of cancer prevention · 2018
    Article
  14. Article
  15. Clinical significance of PD-L1 (CD274) enhanced expression in cervical squamous cell carcinoma.International journal of clinical and experimental pathology · 2018
    Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 3 countries.

Mahboobeh SafaeianDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, Maryland, United States of America. safaeianm@mail.nih.gov
Allan Hildesheim
Paula Gonzalez
Kai Yu
Carolina Porras
Qizhai Li
Ana Cecilia Rodriguez
Mark E Sherman
Mark Schiffman
Sholom Wacholder
Robert Burk
Rolando Herrero
Laurie Burdette
Stephen J Chanock
Sophia S Wang
Division of Cancer Epidemiology and GeneticsInstituto Costarricense de Investigación y Enseñanza en Nutrición y Salud · CRNational Cancer Institute · USAcademy of Mathematics and Systems Science · CNAlbert Einstein College of Medicine · USCity of Hope · US

Funding

HPV Vaccine TrialZIACP010217 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI KREIMER, AIMEE · 2011 to 2025
$42.3M
Intramural NIH HHS
6 · The paper itself

Abstract

backgroundHost genetic factors might affect the risk of progression from infection with carcinogenic human papillomavirus (HPV), the etiologic agent for cervical cancer, to persistent HPV infection, and hence to cervical precancer and cancer. METHODOLOGY/PRINCIPAL

findingsWe assessed 18,310 tag single nucleotide polymorphisms (SNPs) from 1113 genes in 416 cervical intraepithelial neoplasia 3 (CIN3)/cancer cases, 356 women with persistent carcinogenic HPV infection (median persistence of 25 months) and 425 randomly selected women (non-cases and non-HPV persistent) from the 10,049 women from the Guanacaste, Costa Rica HPV natural history cohort. For gene and SNP associations, we computed age-adjusted odds ratio and p-trend. Three comparisons were made: 1) association with CIN3/cancer (compared CIN3/cancer cases to random controls), 2) association with persistence (compared HPV persistence to random controls), and 3) progression (compared CIN3/cancers with HPV-persistent group). Regions statistically significantly associated with CIN3/cancer included genes for peroxiredoxin 3 PRDX3, and ribosomal protein S19 RPS19. The single most significant SNPs from each gene associated with CIN3/cancer were PRDX3 rs7082598 (P(trend)<0.0001), and RPS19 rs2305809 (P(trend)=0.0007), respectively. Both SNPs were also associated with progression. CONCLUSIONS/SIGNIFICANCE: These data suggest involvement of two genes, RSP19 and PRDX3, or other SNPs in linkage disequilibrium, with cervical cancer risk. Further investigation showed that they may be involved in both the persistence and progression transition stages. Our results require replication but, if true, suggest a role for ribosomal dysfunction, mitochondrial processes, and/or oxidative stress, or other unknown function of these genes in cervical carcinogenesis.

Indexed as

Case-Control StudiesCohort StudiesCosta RicaDisease ProgressionFemaleHumansLongitudinal StudiesNeoplasm StagingPapillomaviridaePapillomavirus InfectionsPeroxiredoxin IIIPolymorphism, Single NucleotidePrecancerous ConditionsRibosomal ProteinsRisk FactorsUterine Cervical DysplasiaPeroxiredoxin IIIPRDX3 protein, humanRibosomal Proteinsribosomal protein S19

Identifiers

PMID22496757
PMCPMC3322120
OpenAlexW2039636567

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.