Evidence map›Paper›PMID 22496649›Full record

ArticlePLoS pathogens2012

The exopolysaccharide matrix modulates the interaction between 3D architecture and virulence of a mixed-species oral biofilm.

Jin Xiao, Marlise I Klein, Megan L Falsetta, Bingwen Lu, Claire M Delahunty, John R Yates, Arne Heydorn, Hyun Koo

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 265 papers.

0numbers the graph read from it
0cells of the map it votes in
265citing papers in PubMed
21.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

265 citing papers in PubMed, 497 citations in OpenAlex.

  1. Trial
  2. Beyond roughness: Lateral surface architecture drives Candida albicans virulence on denture polymers.Dental materials : official publication of the Academy of Dental Materials · 2026
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  4. TargetingACS medicinal chemistry letters · 2026
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  11. Susceptibility of the Oral Commensal BacteriumInternational journal of molecular sciences · 2026
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  14. Artemisinins inhibited the synergistic cariogenic effect betweenFrontiers in cellular and infection microbiology · 2026
    Article
  15. Frontiers in oral health · 2026
    Article
  16. Article
  17. Buprenorphine enhancesJournal of oral microbiology · 2026
    Article
  18. Review
  19. Reproducible 3D bioprinting ofMicrobiology spectrum · 2025
    Article
  20. Article

205 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Jin XiaoCenter for Oral Biology, University of Rochester Medical Center, Rochester, New York, United States of America.
Marlise I Klein
Megan L Falsetta
Bingwen Lu
Claire M Delahunty
John R Yates
Arne Heydorn
Hyun Koo
University of Rochester Medical Center · USScripps Research Institute · USGlostrup Hospital · DK

Funding

ZDS2P REGULATES SWE1P-DEPENDENT POLARIZED CELL GROWTH IN S CEREVISIAEP41RR011823 · NCRR · UNIVERSITY OF WASHINGTON · PI SALVESEN, GUY S. · 1996 to 2011
$24.7M
TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 2012 to 2021
$20.7M
Training Program in Oral ScienceT90DE021985 · NIDCR · UNIVERSITY OF ROCHESTER · PI OVITT, CATHERINE, YULE, DAVID I · 2011 to 2021
$5.6M
Catalogue of Human Salivary Secretory ComponentsU01DE016267 · NIDCR · SCRIPPS RESEARCH INSTITUTE, THE · PI YATES, JOHN ROBERT · 2004 to 2007
$5.2M
Molecular Basis for Caries Inhibiting Effects of Cranberry FlavonoidsR01DE016139 · NIDCR · UNIVERSITY OF ROCHESTER · PI KOO, HYUN · 2004 to 2014
$2.5M
Training Program in Oral ScienceR90DE022529 · NIDCR · UNIVERSITY OF ROCHESTER · PI OVITT, CATHERINE, YULE, DAVID I · 2011 to 2021
$877k
NCRR NIH HHS P41 RR011823NIDCR NIH HHS DE16139NIDCR NIH HHS R01 DE016139NIDCR NIH HHS R90 DE022529NIDCR NIH HHS T90 DE021985NIDCR NIH HHS U01 DE016267NIGMS NIH HHS P41 GM103533
6 · The paper itself

Abstract

Virulent biofilms are responsible for a range of infections, including oral diseases. All biofilms harbor a microbial-derived extracellular-matrix. The exopolysaccharides (EPS) formed on tooth-pellicle and bacterial surfaces provide binding sites for microorganisms; eventually the accumulated EPS enmeshes microbial cells. The metabolic activity of the bacteria within this matrix leads to acidification of the milieu. We explored the mechanisms through which the Streptococcus mutans-produced EPS-matrix modulates the three-dimensional (3D) architecture and the population shifts during morphogenesis of biofilms on a saliva-coated-apatitic surface using a mixed-bacterial species system. Concomitantly, we examined whether the matrix influences the development of pH-microenvironments within intact-biofilms using a novel 3D in situ pH-mapping technique. Data reveal that the production of the EPS-matrix helps to create spatial heterogeneities by forming an intricate network of exopolysaccharide-enmeshed bacterial-islets (microcolonies) through localized cell-to-matrix interactions. This complex 3D architecture creates compartmentalized acidic and EPS-rich microenvironments throughout the biofilm, which triggers the dominance of pathogenic S. mutans within a mixed-species system. The establishment of a 3D-matrix and EPS-enmeshed microcolonies were largely mediated by the S. mutans gtfB/gtfC genes, expression of which was enhanced in the presence of Actinomyces naeslundii and Streptococcus oralis. Acidic pockets were found only in the interiors of bacterial-islets that are protected by EPS, which impedes rapid neutralization by buffer (pH 7.0). As a result, regions of low pH (<5.5) were detected at specific locations along the surface of attachment. Resistance to chlorhexidine was enhanced in cells within EPS-microcolony complexes compared to those outside such structures within the biofilm. Our results illustrate the critical interaction between matrix architecture and pH heterogeneity in the 3D environment. The formation of structured acidic-microenvironments in close proximity to the apatite-surface is an essential factor associated with virulence in cariogenic-biofilms. These observations may have relevance beyond the mouth, as matrix is inherent to all biofilms.

Indexed as

Streptococcus mutansStreptococcus oralisAnimalsBiofilmsHumansHydrogen-Ion ConcentrationMouthPolysaccharidesVirulence FactorsPolysaccharidesVirulence Factors

Identifiers

PMID22496649
PMCPMC3320608
OpenAlexW2049104619

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.