Evidence map›Paper›PMID 22496415›Full record

ArticleMolecular biology of the cell2012

TFIIIC localizes budding yeast ETC sites to the nuclear periphery.

Shin-ichiro Hiraga, Sotirios Botsios, David Donze, Anne D Donaldson

Abstract read
In one paragraph

Article in Molecular biology of the cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. The fitness landscape of a tRNA gene.Science (New York, N.Y.) · 2016
    Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Shin-ichiro HiragaInstitute of Medical Sciences, University of Aberdeen, Aberdeen, Scotland, United Kingdom.
Sotirios Botsios
David Donze
Anne D Donaldson
University of Aberdeen · GBLouisiana State University · US

Funding

Cancer Research UK 13356Medical Research Council G0600774Wellcome Trust 082377/Z/07/Z
6 · The paper itself

Abstract

Chromatin function requires specific three-dimensional architectures of chromosomes. We investigated whether Saccharomyces cerevisiae extra TFIIIC (ETC) sites, which bind the TFIIIC transcription factor but do not recruit RNA polymerase III, show specific intranuclear positioning. We show that six of the eight known S. cerevisiae ETC sites localize predominantly at the nuclear periphery, and that ETC sites retain their tethering function when moved to a new chromosomal location. Several lines of evidence indicate that TFIIIC is central to the ETC peripheral localization mechanism. Mutating or deleting the TFIIIC-binding consensus ablated ETC -site peripheral positioning, and inducing degradation of the TFIIIC subunit Tfc3 led to rapid release of an ETC site from the nuclear periphery. We find, moreover, that anchoring one TFIIIC subunit at an ectopic chromosomal site causes recruitment of others and drives peripheral tethering. Localization of ETC sites at the nuclear periphery also requires Mps3, a Sad1-UNC-84-domain protein that spans the inner nuclear membrane. Surprisingly, we find that the chromatin barrier and insulator functions of an ETC site do not depend on correct peripheral localization. In summary, TFIIIC and Mps3 together direct the intranuclear positioning of a new class of S. cerevisiae genomic loci positioned at the nuclear periphery.

Indexed as

Cell Cycle ProteinsCell NucleusCheckpoint Kinase 2ChromatinDNA Polymerase IIIGene Expression Regulation, FungalMembrane ProteinsNuclear ProteinsProtein Serine-Threonine KinasesRNA Polymerase IIISaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsTranscription Factors, TFIIITranscription Factor TFIIICCell Cycle ProteinsCheckpoint Kinase 2ChromatinDNA Polymerase IIIMembrane ProteinsMps3 protein, S cerevisiaeNuclear ProteinsProtein Serine-Threonine KinasesRAD53 protein, S cerevisiaeRNA Polymerase IIISaccharomyces cerevisiae ProteinsTranscription FactorsTranscription Factors, TFIIItranscription factor tauTranscription Factor TFIIIC

Identifiers

PMID22496415
PMCPMC3395662
OpenAlexW2085213791

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.