Evidence map›Paper›PMID 22496223›Full record

ArticleJournal of virology2012

Structure of hepatitis C virus polymerase in complex with primer-template RNA.

Ralph T Mosley, Thomas E Edwards, Eisuke Murakami, Angela M Lam, Rena L Grice, Jinfa Du, Michael J Sofia, Philip A Furman, Michael J Otto

Abstract read
In one paragraph

Article in Journal of virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed.

  1. Trial
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  14. Viruses · 2019
    Review
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  18. Review
  19. Article
  20. Article

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Ralph T MosleyPharmasset Inc, Princeton, New Jersey, USA.
Thomas E Edwards
Eisuke Murakami
Angela M Lam
Rena L Grice
Jinfa Du
Michael J Sofia
Philip A Furman
Michael J Otto

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The replication of the hepatitis C viral (HCV) genome is accomplished by the NS5B RNA-dependent RNA polymerase (RdRp), for which mechanistic understanding and structure-guided drug design efforts have been hampered by its propensity to crystallize in a closed, polymerization-incompetent state. The removal of an autoinhibitory β-hairpin loop from genotype 2a HCV NS5B increases de novo RNA synthesis by >100-fold, promotes RNA binding, and facilitated the determination of the first crystallographic structures of HCV polymerase in complex with RNA primer-template pairs. These crystal structures demonstrate the structural realignment required for primer-template recognition and elongation, provide new insights into HCV RNA synthesis at the molecular level, and may prove useful in the structure-based design of novel antiviral compounds. Additionally, our approach for obtaining the RNA primer-template-bound structure of HCV polymerase may be generally applicable to solving RNA-bound complexes for other viral RdRps that contain similar regulatory β-hairpin loops, including bovine viral diarrhea virus, dengue virus, and West Nile virus.

Indexed as

Cell LineCrystallizationDNA ReplicationHepacivirusHepatitis CHumansModels, MolecularProtein Structure, SecondaryRNARNA-Dependent RNA PolymeraseTemplates, GeneticViral Nonstructural ProteinsNS-5 protein, hepatitis C virusRNARNA-Dependent RNA PolymeraseRNA primersViral Nonstructural Proteins

Identifiers

PMID22496223
PMCPMC3393583

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.