Evidence map›Paper›PMID 22496164›Full record

ArticleBlood2012

TBL1XR1/TP63: a novel recurrent gene fusion in B-cell non-Hodgkin lymphoma.

David W Scott, Karen L Mungall, Susana Ben-Neriah, Sanja Rogic, Ryan D Morin, Graham W Slack, King L Tan, Fong Chun Chan, Raymond S Lim, Joseph M Connors and 4 more

Open access · bronzeAbstract readValidation Study
In one paragraph

Article in Blood, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed, 1 pooled it
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 1 synthesis or guideline pooled it, 64 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Review
  9. Detection of novel and recurrent conjoined genes in non-Hodgkin B-cell lymphoma.Journal of clinical and experimental hematopathology : JCEH · 2021
    Article
  10. Article
  11. Oncology letters · 2020
    Article
  12. Article
  13. Article
  14. Review
  15. Challenges and implications of genomics for T-cell lymphomas.Hematology. American Society of Hematology. Education Program · 2018
    Review
  16. Article
  17. Targeted deep sequencing of gastric marginal zone lymphoma identified alterations of TRAF3 and TNFAIP3 that were mutually exclusive for MALT1 rearrangement.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2018
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

David W ScottCentre for Lymphoid Cancer, British Columbia Cancer Agency, Vancouver, BC, Canada.
Karen L Mungall
Susana Ben-Neriah
Sanja Rogic
Ryan D Morin
Graham W Slack
King L Tan
Fong Chun Chan
Raymond S Lim
Joseph M Connors
Marco A Marra
Andrew J Mungall
Christian Steidl
Randy D Gascoyne
BC Cancer Agency · CAUniversity of British Columbia · CACanada's Michael Smith Genome Sciences Centre · CA

Funding

SPORE in LymphomaP50CA130805 · NCI · UNIVERSITY OF ROCHESTER · PI FISHER, RICHARD I · 2008 to 2012
$11.7M
Molecular Signatures to Improve Diagnosis and Outcome PrU01CA114778 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI CHAN, WING C. · 2005 to 2009
$8.7M
CCR NIH HHS HHSN261200800001CCIHRNCI NIH HHS 1U01CA114778NCI NIH HHS HHSN261200800001ENCI NIH HHS P50 CA130805NCI NIH HHS P50CA130805-01NCI NIH HHS U01 CA114778
6 · The paper itself

Abstract

Recently, the landscape of single base mutations in diffuse large B-cell lymphoma (DLBCL) was described. Here we report the discovery of a gene fusion between TBL1XR1 and TP63, the only recurrent somatic novel gene fusion identified in our analysis of transcriptome data from 96 DLBCL cases. Based on this cohort and a further 157 DLBCL cases analyzed by FISH, the incidence in de novo germinal center B cell-like (GCB) DLBCL is 5% (6 of 115). The fusion appears exclusive to GCB and was not seen in 138 non-GCB cases examined (P = .008, Fisher exact test) but was present at low incidence in follicular lymphoma (1 of 81). In all 7 cases identified, the 3' end of the fusion consists of exons 4 and onwards of TP63. The recurrence, subtype enrichment, and the remarkably conserved nature of the TP63 portion of the fusion suggest an important functional role in the lymphomas that harbor this event.

Indexed as

Base SequenceChromosomes, Human, Pair 3Cohort StudiesDNA Mutational AnalysisGene FrequencyGenetic Association StudiesHumansIncidenceIn Situ Hybridization, FluorescenceLymphoma, B-CellLymphoma, Non-HodgkinMolecular Sequence DataNuclear ProteinsOncogene Proteins, FusionReceptors, Cytoplasmic and NuclearRepressor ProteinsNuclear ProteinsOncogene Proteins, FusionReceptors, Cytoplasmic and NuclearRepressor ProteinsTBL1XR1 protein, humanTP63 protein, humanTranscription FactorsTumor Suppressor Proteins

Identifiers

PMID22496164
PMCPMC3367896
OpenAlexW2047861432

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.