Evidence map›Paper›PMID 22493294›Full record

ArticleBlood2012

Phenotype diversity in type 1 Gaucher disease: discovering the genetic basis of Gaucher disease/hematologic malignancy phenotype by individual genome analysis.

Sarah M Lo, Murim Choi, Jun Liu, Dhanpat Jain, Rolf G Boot, Wouter W Kallemeijn, Johannes M F G Aerts, Farzana Pashankar, Gary M Kupfer, Shrikant Mane and 2 more

Erratum issuedOpen access · bronzeAbstract readCase Reports
In one paragraph

Article in Blood, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 42 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. Lysosomal diseases: diagnostic update.Journal of inherited metabolic disease · 2014
    Review
  14. Article
  15. Review
  16. Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Sarah M LoSection of Pediatric Hematology-Oncology, Department of Pediatrics, Yale School of Medicine, 333 Cedar St., New Haven, CT 06520, USA.
Murim Choi
Jun Liu
Dhanpat Jain
Rolf G Boot
Wouter W Kallemeijn
Johannes M F G Aerts
Farzana Pashankar
Gary M Kupfer
Shrikant Mane
Richard P Lifton
Pramod K Mistry
Yale University · USAcademic Medical Center · NLHoward Hughes Medical Institute · US

Funding

Training & EducationU54NS065768 · NINDS · UNIVERSITY OF MINNESOTA · PI WHITLEY, CHESTER B. · 2009 to 2024
$17.7M
Yale Center for Mendelian DisordersU54HG006504 · NHGRI · YALE UNIVERSITY · PI GERSTEIN, MARK BENDER, GUNEL, MURAT · 2012 to 2015
$11.0M
POR In Inherited Metabolic Liver DiseasesK24DK066306 · NIDDK · YALE UNIVERSITY · PI MISTRY, PRAMOD K · 2005 to 2009
$738k
NIDDK NIH HHS K24 DK066306NIDDK NIH HHS K24DK066306NINDS NIH HHS U54 NS065768
6 · The paper itself

Abstract

Gaucher disease (GD), an inherited macrophage glycosphingolipidosis, manifests with an extraordinary variety of phenotypes that show imperfect correlation with mutations in the GBA gene. In addition to the classic manifestations, patients suffer from increased susceptibility to hematologic and nonhematologic malignancies. The mechanism(s) underlying malignancy in GD is not known, but is postulated to be secondary to macrophage dysfunction and immune dysregulation arising from lysosomal accumulation of glucocerebroside. However, there is weak correlation between GD/cancer phenotype and the systemic burden of glucocerebroside-laden macrophages. Therefore, we hypothesized that genetic modifier(s) may underlie the GD/cancer phenotype. In the present study, the genetic basis of GD/T-cell acute lymphoblastic lymphoma in 2 affected siblings was deciphered through genomic analysis. GBA gene sequencing revealed homozygosity for a novel mutation, D137N. Whole-exome capture and massively parallel sequencing combined with homozygosity mapping identified a homozygous novel mutation in the MSH6 gene that leads to constitutional mismatch repair deficiency syndrome and increased cancer risk. Enzyme studies demonstrated that the D137N mutation in GBA is a pathogenic mutation, and immunohistochemistry confirmed the absence of the MSH6 protein. Therefore, precise phenotype annotation followed by individual genome analysis has the potential to identify genetic modifiers of GD, facilitate personalized management, and provide novel insights into disease pathophysiology.

Indexed as

Sequence Analysis, DNAAdultbeta-GlucosidaseChildChild, PreschoolFemaleGaucher DiseaseGenome, HumanHematologic NeoplasmsHumansIndividualityMalePedigreePhenotypeSiblingsbeta-Glucosidase

Identifiers

PMID22493294
PMCPMC3367875
OpenAlexW2007119228

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.