Evidence map›Paper›PMID 22493288›Full record

ArticleThe Journal of biological chemistry2012

Atypical membrane-embedded phosphatidylinositol 3,4-bisphosphate (PI(3,4)P2)-binding site on p47(phox) Phox homology (PX) domain revealed by NMR.

Pavlos Stampoulis, Takumi Ueda, Masahiko Matsumoto, Hiroaki Terasawa, Kei Miyano, Hideki Sumimoto, Ichio Shimada

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Phosphoinositide Recognition Sites Are Blocked by Metabolite Attachment.Frontiers in cell and developmental biology · 2021
    Article
  7. Article
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Pavlos StampoulisGraduate School of Pharmaceutical Sciences, University of Tokyo, Tokyo 113-0033; Japan Biological Informatics Consortium, Tokyo 104-0032.
Takumi UedaGraduate School of Pharmaceutical Sciences, University of Tokyo, Tokyo 113-0033.
Masahiko MatsumotoGraduate School of Pharmaceutical Sciences, University of Tokyo, Tokyo 113-0033.
Hiroaki TerasawaGraduate School of Pharmaceutical Sciences, University of Tokyo, Tokyo 113-0033.
Kei MiyanoGraduate School of Medical Sciences, Kyushu University, Fukuoka 812-8582.
Hideki SumimotoGraduate School of Medical Sciences, Kyushu University, Fukuoka 812-8582.
Ichio ShimadaGraduate School of Pharmaceutical Sciences, University of Tokyo, Tokyo 113-0033; Biomedicinal Information Research Center, National Institute of Advanced Industrial Science and Technology, Tokyo 135-0064, Japan. Electronic address: shimada@iw-nmr.f.u-tokyo.ac.jp.
The University of Tokyo · JPKyushu University · JPJapan Biological Informatics Consortium · JPNational Institute of Advanced Industrial Science and Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Phox homology (PX) domain is a functional module that targets membranes through specific interactions with phosphoinositides. The p47(phox) PX domain preferably binds phosphatidylinositol 3,4-bisphosphate (PI(3,4)P(2)) and plays a pivotal role in the assembly of phagocyte NADPH oxidase. We describe the PI(3,4)P(2) binding mode of the p47(phox) PX domain as identified by a transferred cross-saturation experiment. The identified PI(3,4)P(2)-binding site, which includes the residues of helices α1 and α1' and the following loop up to the distorted left-handed PP(II) helix, is located at a unique position, as compared with the phosphoinositide-binding sites of all other PX domains characterized thus far. Mutational analyses corroborated the results of the transferred cross-saturation experiments. Moreover, experiments with intact cells demonstrated the importance of this unique binding site for the function of the NADPH oxidase. The low affinity and selectivity of the atypical phosphoinositide-binding site on the p47(phox) PX domain suggest that different types of phosphoinositides sequentially bind to the p47(phox) PX domain, allowing the regulation of the multiple events that characterize the assembly and activation of phagocyte NADPH oxidase.

Indexed as

Binding SitesEnzyme ActivationHumansNADPH OxidasesNuclear Magnetic Resonance, BiomolecularPhosphatidylinositol PhosphatesProtein Structure, SecondaryNADPH Oxidasesneutrophil cytosolic factor 1phosphatidylinositol 3,4-diphosphatePhosphatidylinositol Phosphates

Identifiers

PMID22493288
PMCPMC3366843
OpenAlexW1971933737

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.