Evidence map›Paper›PMID 22493278›Full record

ArticleJournal of medical microbiology2012

Genetic diversity of locus of enterocyte effacement genes of enteropathogenic Escherichia coli isolated from Peruvian children.

C A Contreras, T J Ochoa, J Ruiz, D W Lacher, D Durand, C DebRoy, C F Lanata, T G Cleary

Abstract read
In one paragraph

Article in Journal of medical microbiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Immunogenic Domains and Secondary Structure ofFrontiers in immunology · 2017
    Article
  5. Article
  6. Adherence and virulence genes of Escherichia coli from children diarrhoea in the Brazilian Amazon.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2015
    Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

C A ContrerasInstituto de Medicina Tropical 'Alexander von Humboldt', Universidad Peruana Cayetano Heredia, Lima, Peru.
T J OchoaUniversity of Texas School of Public Health, Houston, USA.
J RuizCIBERESP, Barcelona, Spain.
D W LacherCenter for Food Safety and Applied Nutrition, US Food and Drug Administration, Laurel, Maryland, USA.
D DurandInstituto de Medicina Tropical 'Alexander von Humboldt', Universidad Peruana Cayetano Heredia, Lima, Peru.
C DebRoyE. coli Reference Center, Department of Veterinary and Biomedical Sciences, Pennsylvania State University, Pennsylvania, USA.
C F LanataUniversidad Peruana de Ciencias Aplicadas, Lima, Peru.
T G ClearyUniversity of Texas School of Public Health, Houston, USA.

Funding

Randomonized controlled trial-lactoferrin prevention of diarrhea in childrenR01HD051716 · NICHD · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI CLEARY, THOMAS GEORGE · 2007 to 2010
$960k
Role of virulence heterogeneity in acute and presistent EPEC diarrheaK01TW007405 · FIC · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI OCHOA, THERESA J · 2006 to 2009
$433k
FIC NIH HHS 1K01TW007405FIC NIH HHS K01 TW007405NICHD NIH HHS R01 HD051716NICHD NIH HHS R01-HD051716
6 · The paper itself

Abstract

The aim of this study was to determine the frequency and allele associations of locus of enterocyte effacement encoded esp and tir genes among 181 enteropathogenic Escherichia coli (EPEC) strains (90 diarrhoea-associated and 91 controls) isolated from Peruvian children under 18 months of age. We analysed espA, espB, espD and tir alleles by PCR-RFLP. EPEC strains were isolated with higher frequency from healthy controls (91/424, 21.7%) than from diarrhoeal samples (90/936, 9.6%) (P<0.001); 28.9% of diarrhoeal and 17.6% of control samples were typical EPEC (tEPEC). The distribution of espA alleles (alpha, beta, beta2 and gamma) and espD alleles (alpha, beta, gamma and a new variant, espD-N1) between tEPEC and atypical EPEC (aEPEC) was significantly different (P<0.05). espD-alpha was more common among acute episodes (P<0.05). espB typing resulted in five alleles (alpha, beta, gamma and two new sub-alleles, espB-alpha2 and espB-alpha3), while tir-beta and tir-gamma2 were the most common intimin receptor subtypes. Seventy-two combinations of espA, espB, espD and tir alleles were found; the most prevalent combination was espA-beta, espB-beta, espD-beta, tir-beta (34/181 strains), which was more frequent among tEPEC strains (P<0.05). Our findings indicate that there is a high degree of heterogeneity among EPEC strains isolated from Peruvian children and that aEPEC and tEPEC variants cluster.

Indexed as

Genetic VariationChildChild, PreschoolDNA, BacterialDNA FingerprintingEnteropathogenic Escherichia coliEscherichia coli InfectionsEscherichia coli ProteinsGenotypeHumansInfantMolecular EpidemiologyMolecular Sequence DataPeruPhosphoproteinsPolymerase Chain ReactionDNA, BacterialEscherichia coli ProteinsLEE protein, E coliPhosphoproteins

Identifiers

PMID22493278
PMCPMC3542133

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.