Evidence map›Paper›PMID 22492708›Full record

ArticleNucleic acids research2012

Chimeric piggyBac transposases for genomic targeting in human cells.

Jesse B Owens, Johann Urschitz, Ilko Stoytchev, Nong C Dang, Zoia Stoytcheva, Mahdi Belcaid, Kommineni J Maragathavally, Craig J Coates, David J Segal, Stefan Moisyadi

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 56 citations in OpenAlex.

  1. Mining and engineering of activeSynthetic and systems biotechnology · 2027
    Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Gene editing and its applications in biomedicine.Science China. Life sciences · 2022
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. RNA-guidedSynthetic biology (Oxford, England) · 2019
    Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Review
  18. DNA Transposition at Work.Chemical reviews · 2016
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Jesse B OwensInstitute for Biogenesis Research, Department of Anatomy, Biochemistry, and Physiology, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, HI 96822, USA.
Johann Urschitz
Ilko Stoytchev
Nong C Dang
Zoia Stoytcheva
Mahdi Belcaid
Kommineni J Maragathavally
Craig J Coates
David J Segal
Stefan Moisyadi
University of Hawaiʻi at Mānoa · US

Funding

RESEARCH DESIGN AND BIOSTATISTICS COREU54MD007584 · NIMHD · UNIVERSITY OF HAWAII AT MANOA · PI HEDGES, JERRIS ROBERT, MOKUAU, NOREEN · 2012 to 2018
$21.1M
UHI COBRE: P3: GROUP A STREPT IN RELATION TO ACUTE RHEUMATIC FEVER IN HAWAIIP20RR018727 · NCRR · UNIVERSITY OF HAWAII AT MANOA · PI VERMA, SAGUNA · 2003 to 2011
$13.8M
Transgenic Mouse, ICSI and IVF CoreP20GM103457 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI WARD, WILLIAM S · 2012 to 2018
$12.9M
ULTRASOUND-TARGETED MICROBUBBLE DESTRUCTION IN COMBINATION WITH THE PIGGYBACP20RR024206 · NCRR · UNIVERSITY OF HAWAII AT MANOA · PI GOH, WILLIAM AI-KENG · 2008 to 2011
$8.4M
Pacific Center for Emerging Infectious Diseases ResearchP20GM103516 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI YANAGIHARA, RICHARD · 2012 to 2014
$6.1M
Transposon Based Mammalian Transgenesis and TransfectionR01GM083158 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI MOISYADI, STEFAN · 2008 to 2012
$1.5M
NCRR NIH HHS 5P20RR024206-05NCRR NIH HHS P20 RR018727NCRR NIH HHS P20RR018727NCRR NIH HHS P20 RR024206NIGMS NIH HHS 8P20GM103457-05NIGMS NIH HHS P20 GM103457NIGMS NIH HHS P20 GM103516NIGMS NIH HHS R01 GM083158NIGMS NIH HHS R01GM083158-01A1NIMHD NIH HHS U54 MD007584
6 · The paper itself

Abstract

Integrating vectors such as viruses and transposons insert transgenes semi-randomly and can potentially disrupt or deregulate genes. For these techniques to be of therapeutic value, a method for controlling the precise location of insertion is required. The piggyBac (PB) transposase is an efficient gene transfer vector active in a variety of cell types and proven to be amenable to modification. Here we present the design and validation of chimeric PB proteins fused to the Gal4 DNA binding domain with the ability to target transgenes to pre-determined sites. Upstream activating sequence (UAS) Gal4 recognition sites harbored on recipient plasmids were preferentially targeted by the chimeric Gal4-PB transposase in human cells. To analyze the ability of these PB fusion proteins to target chromosomal locations, UAS sites were randomly integrated throughout the genome using the Sleeping Beauty transposon. Both N- and C-terminal Gal4-PB fusion proteins but not native PB were capable of targeting transposition nearby these introduced sites. A genome-wide integration analysis revealed the ability of our fusion constructs to bias 24% of integrations near endogenous Gal4 recognition sequences. This work provides a powerful approach to enhance the properties of the PB system for applications such as genetic engineering and gene therapy.

Indexed as

Gene TargetingDNA-Binding ProteinsGenomeHEK293 CellsHumansPlasmidsRecombinant Fusion ProteinsTransposasesDNA-Binding ProteinsRecombinant Fusion ProteinsTransposases

Identifiers

PMID22492708
PMCPMC3413120
OpenAlexW2139908188

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.