ArticleBioinformatics (Oxford, England)2012
PaGeFinder: quantitative identification of spatiotemporal pattern genes.
Article in Bioinformatics (Oxford, England), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.
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Who cites it
32 citing papers in PubMed.
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- Comparative Study of Transcriptome in the Hearts Isolated from Mice, Rats, and Humans.Biomolecules · 2022Article
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- Transcriptome analysis of skin color variation during and after overwintering of Malaysian red tilapia.Fish physiology and biochemistry · 2022Article
- Identification, Characterization and Function of Orphan Genes Among the Current Cucurbitaceae Genomes.Frontiers in plant science · 2022Article
- Public transcriptome database-based selection and validation of reliable reference genes for breast cancer research.Biomedical engineering online · 2021Article
- Identification, characterization and expression analysis of lineage-specific genes within mangrove species Aegiceras corniculatum.Molecular genetics and genomics : MGG · 2021Article
- Genome-Wide Identification, Characterization and Function Analysis of Lineage-Specific Genes in the Tea PlantFrontiers in genetics · 2021Article
- Transcriptome-Based Selection and Validation of Reference Genes for Gene Expression Analysis ofFrontiers in microbiology · 2021Article
- Transcriptome-based selection and validation of optimal house-keeping genes for skin research in goats (Capra hircus).BMC genomics · 2020Article
- mRBPome capture identifies the RNA-binding protein TRIM71, an essential regulator of spermatogonial differentiation.Development (Cambridge, England) · 2020Article
- Missing Value Estimation Methods Research for Arrhythmia Classification Using the Modified Kernel Difference-Weighted KNN Algorithms.BioMed research international · 2020Article
- Uncovering the mouse olfactory long non-coding transcriptome with a novel machine-learning model.DNA research : an international journal for rapid publication of reports on genes and genomes · 2019Article
- Article
- Prediction of GluN2B-CTMolecules (Basel, Switzerland) · 2018Article
Corrections and comments
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Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
unlabelledPattern Gene Finder (PaGeFinder) is a web-based server for on-line detection of gene expression patterns from serial transcriptomic data generated by high-throughput technologies like microarray or next-generation sequencing. Three particular parameters, the specificity measure, the dispersion measure and the contribution measure, were introduced and implemented in PaGeFinder to help quantitative and interactive identification of pattern genes like housekeeping genes, specific (selective) genes and repressed genes. Besides the on-line computation service, the PaGeFinder also provides downloadable Java programs for local detection of gene expression patterns. AVAILABILITY: http://bioinf.xmu.edu.cn:8080/PaGeFinder/index.jsp
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