Evidence map›Paper›PMID 22491452›Full record

ArticleJournal of virology2012

Serology-enabled discovery of genetically diverse hepaciviruses in a new host.

Peter D Burbelo, Edward J Dubovi, Peter Simmonds, Jan L Medina, Jose A Henriquez, Nischay Mishra, Jason Wagner, Rafal Tokarz, John M Cullen, Michael J Iadarola and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 144 papers.

0numbers the graph read from it
0cells of the map it votes in
144citing papers in PubMed
12.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

144 citing papers in PubMed, 243 citations in OpenAlex.

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84 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 7 institutions in 2 countries.

Peter D BurbeloNeurobiology and Pain Therapeutics Section, Laboratory of Sensory Biology, National Institute of Dental and Craniofacial Research, National Institutes of Health, Bethesda, Maryland, USA.
Edward J Dubovi
Peter Simmonds
Jan L Medina
Jose A Henriquez
Nischay Mishra
Jason Wagner
Rafal Tokarz
John M Cullen
Michael J Iadarola
Charles M Rice
W Ian Lipkin
Amit Kapoor
Columbia University · USNational Institutes of Health · USCentre for Immunity, Infection and Evolution · GBCornell University · USNational Institute of Dental and Craniofacial Research · USNorth Carolina State University · USRockefeller University · US

Funding

Viral Pathogenesis and TherapeuticsU54AI057158 · NIAID · WADSWORTH CENTER · PI LEVY, DAVID E · 2003 to 2014
$100.8M
Development of Complement Modulating Therapeutics for AMDR24EY017404 · NEI · UNIVERSITY OF UTAH · PI HAGEMAN, GREGORY S · 2006 to 2010
$14.8M
Viral Arrays for BiodefenseU01AI070411 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI LIPKIN, W. IAN · 2006 to 2010
$4.4M
Mechanisms of Pain and Immune ProcessesZIADE000724 · NIDCR · NATIONAL INSTITUTE OF DENTAL & CRANIOFACIAL RESEARCH · PI IADAROLA, MICHAEL J. · 2009 to 2012
$2.6M
Risk of Viral Emergence from BatsR01AI079231 · NIAID · ECOHEALTH ALLIANCE, INC. · PI DASZAK, PETER · 2008 to 2012
$2.6M
Molecular Characterization of Novel AstrovirusesR21AI090196 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI KAPOOR, AMIT · 2010 to 2011
$454k
Study of a novel picornavirus genus associated with Acute Flaccid ParalysisR21AI081132 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI KAPOOR, AMIT · 2011 to 2012
$448k
Mechanisms of Pain and Immune ProcessesZIACL090034 · CLC · CLINICAL CENTER · PI MANNES, ANDREW · 2014 to 2025
$0k
Intramural NIH HHSNEI NIH HHS EY017404NEI NIH HHS R24 EY017404NIAID NIH HHS AI070411NIAID NIH HHS AI079231NIAID NIH HHS AI081132NIAID NIH HHS AI090196NIAID NIH HHS AI57158NIAID NIH HHS R01 AI079231NIAID NIH HHS R21 AI081132NIAID NIH HHS R21 AI090196NIAID NIH HHS U01 AI070411NIAID NIH HHS U54 AI057158Wellcome Trust 095831
6 · The paper itself

Abstract

Genetic and biological characterization of new hepaciviruses infecting animals contributes to our understanding of the ultimate origins of hepatitis C virus (HCV) infection in humans and dramatically enhances our ability to study its pathogenesis using tractable animal models. Animal homologs of HCV include a recently discovered canine hepacivirus (CHV) and GB virus B (GBV-B), both viruses with largely undetermined natural host ranges. Here we used a versatile serology-based approach to determine the natural host of the only known nonprimate hepacivirus (NPHV), CHV, which is also the closest phylogenetic relative of HCV. Recombinant protein expressed from the helicase domain of CHV NS3 was used as antigen in the luciferase immunoprecipitation system (LIPS) assay to screen several nonprimate animal species. Thirty-six samples from 103 horses were immunoreactive, and viral genomic RNA was present in 8 of the 36 seropositive animals and none of the seronegative animals. Complete genome sequences of these 8 genetically diverse NPHVs showed 14% (range, 6.4% to 17.2%) nucleotide sequence divergence, with most changes occurring at synonymous sites. RNA secondary structure prediction of the 383-base 5' untranslated region of NPHV was refined and extended through mapping of polymorphic sites to unpaired regions or (semi)covariant pairings. Similar approaches were adopted to delineate extensive RNA secondary structures in the coding region of the genome, predicted to form 27 regularly spaced, thermodynamically stable stem-loops. Together, these findings suggest a promising new nonprimate animal model and provide a database that will aid creation of functional NPHV cDNA clones and other novel tools for hepacivirus studies.

Indexed as

Host Specificity5' Untranslated RegionsAnimalsAntigens, ViralHepacivirusHepatitis CHepatitis C AntibodiesHorse DiseasesHorsesMolecular Sequence DataNucleic Acid ConformationRecombinant ProteinsRNA, ViralSequence Analysis, DNA5' Untranslated RegionsAntigens, ViralHepatitis C AntibodiesRecombinant ProteinsRNA, Viral

Identifiers

PMID22491452
PMCPMC3372197
OpenAlexW2148979433

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.