Evidence map›Paper›PMID 22490869›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2012

NLRC5 cooperates with the RFX transcription factor complex to induce MHC class I gene expression.

Torsten B Meissner, Yuen-Joyce Liu, Kyoung-Hee Lee, Amy Li, Amlan Biswas, Marja C J A van Eggermond, Peter J van den Elsen, Koichi S Kobayashi

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 90 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
90citing papers in PubMed, 1 pooled it
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

90 citing papers in PubMed, 1 synthesis or guideline pooled it, 127 citations in OpenAlex.

  1. Pooled it
  2. Trial
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  14. Review
  15. Transcriptomic signatures in peripheral CD4Frontiers in immunology · 2025
    Article
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  18. Targeted demethylation and activation ofProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  19. Article
  20. Review

30 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Torsten B MeissnerDepartment of Cancer Immunology and AIDS, Dana-Farber Cancer Institute, Boston, MA 02215, USA.
Yuen-Joyce Liu
Kyoung-Hee Lee
Amy Li
Amlan Biswas
Marja C J A van Eggermond
Peter J van den Elsen
Koichi S Kobayashi
Dana-Farber Cancer Institute · USHarvard University · USAmsterdam UMC Location VUmc · NLLeiden University Medical Center · NL

Funding

Nod2-mediated regulation of intestinal homeostasisR01DK074738 · NIDDK · DANA-FARBER CANCER INST · PI KOBAYASHI, KOICHI S · 2007 to 2011
$1.4M
NIDDK NIH HHS R01 DK074738
6 · The paper itself

Abstract

Tight regulation of MHC class I gene expression is critical for CD8 T cell activation and host adaptive-immune responses. The promoters of MHC class I genes contain a well-conserved core module, the W/S-X-Y motif, which assembles a nucleoprotein complex termed MHC enhanceosome. A member of the nucleotide-binding domain, leucine-rich repeat (NLR) protein family, NLRC5, is a newly identified transcriptional regulator of MHC class I genes. NLRC5 associates with and transactivates the proximal promoters of MHC class I genes, although the molecular mechanism of transactivation has not been understood. In this article, we show that NLRC5-mediated MHC class I gene induction requires the W/S and X1, X2 cis-regulatory elements. The transcription factors RFX5, RFXAP, and RFXANK/B, which compose the RFX protein complex and associate with the X1 box, cooperate with NLRC5 for MHC class I expression. Coimmunoprecipitation experiments revealed that NLRC5 specifically interacts with the RFX subunit RFXANK/B via its ankyrin repeats. In addition, we show that NLRC5 can cooperate with ATF1 and the transcriptional coactivators CBP/p300 and general control nonderepressible 5, which display histone acetyltransferase activity. Taken together, our data suggest that NLRC5 participates in an MHC class I-specific enhanceosome, which assembles on the conserved W/S-X-Y core module of the MHC class I proximal promoters, including the RFX factor components and CREB/ATF1 family transcription factors, to promote MHC class I gene expression.

Indexed as

Activating Transcription Factor 1Amino Acid MotifsCell LineCell Line, TumorDNA-Binding ProteinsHEK293 CellsHLA-B AntigensHumansIntracellular Signaling Peptides and ProteinsMultigene FamilyPromoter Regions, GeneticRegulatory Factor X Transcription FactorsRegulatory Sequences, Nucleic AcidTranscriptional ActivationTranscription FactorsActivating Transcription Factor 1ATF1 protein, humanDNA-Binding ProteinsHLA-B AntigensIntracellular Signaling Peptides and ProteinsNLRC5 protein, humanRegulatory Factor X Transcription FactorsTranscription Factors

Identifiers

PMID22490869
PMCPMC3345046
OpenAlexW2097056602

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.