Evidence map›Paper›PMID 22489843›Full record

ArticleACS chemical biology2012

Mechanism and rates of exchange of L7/L12 between ribosomes and the effects of binding EF-G.

Stéphanie Deroo, Suk-Joon Hyung, Julien Marcoux, Yuliya Gordiyenko, Ravi Kiran Koripella, Suparna Sanyal, Carol V Robinson

Abstract read
In one paragraph

Article in ACS chemical biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Stéphanie DerooDepartment of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QZ, U.K.
Suk-Joon Hyung
Julien Marcoux
Yuliya Gordiyenko
Ravi Kiran Koripella
Suparna Sanyal
Carol V Robinson
Uppsala University · SEUniversity of Michigan–Ann Arbor · US

Funding

Biotechnology and Biological Sciences Research CouncilWellcome Trust 088150
6 · The paper itself

Abstract

The ribosomal stalk complex binds and recruits translation factors to the ribosome during protein biosynthesis. In Escherichia coli the stalk is composed of protein L10 and four copies of L7/L12. Despite the crucial role of the stalk, mechanistic details of L7/L12 subunit exchange are not established. By incubating isotopically labeled intact ribosomes with their unlabeled counterparts we monitored the exchange of the labile stalk proteins by recording mass spectra as a function of time. On the basis of kinetic analysis, we proposed a mechanism whereby exchange proceeds via L7/L12 monomers and dimers. We also compared exchange of L7/L12 from free ribosomes with exchange from ribosomes in complex with elongation factor G (EF-G), trapped in the posttranslocational state by fusidic acid. Results showed that binding of EF-G reduces the L7/L12 exchange reaction of monomers by ~27% and of dimers by ~47% compared with exchange from free ribosomes. This is consistent with a model in which binding of EF-G does not modify interactions between the L7/L12 monomers but rather one of the four monomers, and as a result one of the two dimers, become anchored to the ribosome-EF-G complex preventing their free exchange. Overall therefore our results not only provide mechanistic insight into the exchange of L7/L12 monomers and dimers and the effects of EF-G binding but also have implications for modulating stability in response to environmental and functional stimuli within the cell.

Indexed as

Escherichia coliEscherichia coli ProteinsKineticsMass SpectrometryPeptide Elongation Factor GProtein BindingProtein MultimerizationProtein SubunitsRibosomal ProteinsRibosomesEscherichia coli ProteinsPeptide Elongation Factor GProtein SubunitsRibosomal ProteinsrplL protein, E coli

Identifiers

PMID22489843
PMCPMC4058753
OpenAlexW2050897393

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.