Evidence map›Paper›PMID 22488849›Full record

ArticleAmerican journal of medical genetics. Part A2012

Alagille syndrome in a Vietnamese cohort: mutation analysis and assessment of facial features.

Henry C Lin, Phuc Le Hoang, Anne Hutchinson, Grace Chao, Jennifer Gerfen, Kathleen M Loomes, Ian Krantz, Binita M Kamath, Nancy B Spinner

Abstract read
In one paragraph

Article in American journal of medical genetics. Part A, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Different clinical and genetic features of Alagille patients with progressive diseaseJGH open : an open access journal of gastroenterology and hepatology · 2022
    Article
  5. Article
  6. Observational
  7. NovelInternational journal of molecular sciences · 2019
    Article
  8. Article
  9. Article
  10. [Identification of a novel JAG1 mutation in a family affected by Alagille syndrome].Zhongguo dang dai er ke za zhi = Chinese journal of contemporary pediatrics · 2016
    Article
  11. Alagille syndrome: clinical perspectives.The application of clinical genetics · 2016
    Review
  12. Article
  13. JAGGED1 gene variations in Chinese twin sisters with Alagille syndrome.International journal of clinical and experimental pathology · 2015
    Article
  14. Article
  15. Alagille Syndrome and the Liver: Current Insights.Euroasian journal of hepato-gastroenterology
    Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Henry C LinDivision of Gastroenterology, Hepatology, and Nutrition, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania 19104, USA.
Phuc Le Hoang
Anne Hutchinson
Grace Chao
Jennifer Gerfen
Kathleen M Loomes
Ian Krantz
Binita M Kamath
Nancy B Spinner
Children's Hospital of Philadelphia · USChildren's Hospital 2 · VNSickKids Foundation · CA

Funding

Genetic Modifiers of Liver Disease Severity in Alagille SyndromeR01DK081702 · NIDDK · CHILDREN'S HOSP OF PHILADELPHIA · PI SPINNER, NANCY BETTINA · 2009 to 2013
$3.5M
NIDDK NIH HHS DK081702NIDDK NIH HHS R01 DK081702
6 · The paper itself

Abstract

Alagille syndrome (ALGS, OMIM #118450) is an autosomal dominant disorder that affects multiple organ systems including the liver, heart, eyes, vertebrae, and face. ALGS is caused by mutations in one of two genes in the Notch Signaling Pathway, Jagged1 (JAG1) or NOTCH2. In this study, analysis of 21 Vietnamese ALGS individuals led to the identification of 19 different mutations (18 JAG1 and 1 NOTCH2), 17 of which are novel, including the third reported NOTCH2 mutation in Alagille Syndrome. The spectrum of JAG1 mutations in the Vietnamese patients is similar to that previously reported, including nine frameshift, three missense, two splice site, one nonsense, two whole gene, and one partial gene deletion. The missense mutations are all likely to be disease causing, as two are loss of cysteines (C22R and C78G) and the third creates a cryptic splice site in exon 9 (G386R). No correlation between genotype and phenotype was observed. Assessment of clinical phenotype revealed that skeletal manifestations occur with a higher frequency than in previously reported Alagille cohorts. Facial features were difficult to assess and a Vietnamese pediatric gastroenterologist was only able to identify the facial phenotype in 61% of the cohort. To assess the agreement among North American dysmorphologists at detecting the presence of ALGS facial features in the Vietnamese patients, 37 clinical dysmorphologists evaluated a photographic panel of 20 Vietnamese children with and without ALGS. The dysmorphologists were unable to identify the individuals with ALGS in the majority of cases, suggesting that evaluation of facial features should not be used in the diagnosis of ALGS in this population. This is the first report of mutations and phenotypic spectrum of ALGS in a Vietnamese population.

Indexed as

MutationAlagille SyndromeAsian PeopleCalcium-Binding ProteinsCohort StudiesDNA Mutational AnalysisFaceHumansIntercellular Signaling Peptides and ProteinsJagged-1 ProteinMembrane ProteinsPhenotypeReceptor, Notch2Serrate-Jagged ProteinsVietnamCalcium-Binding ProteinsIntercellular Signaling Peptides and ProteinsJAG1 protein, humanJagged-1 ProteinMembrane ProteinsNOTCH2 protein, humanReceptor, Notch2Serrate-Jagged Proteins

Identifiers

PMID22488849
PMCPMC3331947
OpenAlexW2070325504

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.