Evidence map›Paper›PMID 22488673›Full record

ArticleHuman mutation2012

Splice site, frameshift, and chimeric GFAP mutations in Alexander disease.

Daniel Flint, Rong Li, Lital S Webster, Sakkubai Naidu, Edwin Kolodny, Alan Percy, Marjo van der Knaap, James M Powers, John F Mantovani, Josef Ekstein and 3 more

Open access · greenAbstract readCase Reports
In one paragraph

Article in Human mutation, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Alexander disease: models, mechanisms, and medicine.Current opinion in neurobiology · 2022
    Review
  6. Activation of a Cryptic Splice Site ofNeurology. Genetics · 2021
    Article
  7. Article
  8. Article
  9. Article
  10. Refining the concept of GFAP toxicity in Alexander disease.Journal of neurodevelopmental disorders · 2019
    Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. A new mutation in GFAP widens the spectrum of Alexander disease.European journal of human genetics : EJHG · 2015
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 10 institutions in 2 countries.

Daniel FlintDepartment of Neurobiology and the Civitan International Research Center, Center for Glial Biology in Medicine, Evelyn F. McKnight Brain Institute, University of Alabama at Birmingham, AL 35294, USA.
Rong Li
Lital S Webster
Sakkubai Naidu
Edwin Kolodny
Alan Percy
Marjo van der Knaap
James M Powers
John F Mantovani
Josef Ekstein
James E Goldman
Albee Messing
Michael Brenner
University of Alabama at Birmingham · USCivitan International · USAmsterdam UMC Location VUmc · NLColumbia University · USKennedy Krieger Institute · USNew York University · USPark Avenue Synagogue · USUniversity of Rochester · USUniversity of Wisconsin–Madison · USWashington University in St. Louis · US

Funding

WISCONSIN CENTER ON MENTAL RETARDATION: CORE SUPPORTP30HD003352 · NICHD · UNIVERSITY OF WISCONSIN-MADISON · PI MESSING, ALBEE · 1985 to 2015
$25.2M
The impact of GFAP mutations upon filament networksP01NS042803 · NINDS · UNIVERSITY OF WISCONSIN-MADISON · PI MESSING, ALBEE · 2002 to 2012
$11.1M
UAB MENTAL RETARDATION RESEARCH CENTER (MRRC)P30HD038985 · NICHD · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI BRENNER, MICHAEL · 2000 to 2012
$8.6M
Training Program in Cell, Molecular, and Developmental BiologyT32GM008111 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI YODER, BRADLEY K. · 1985 to 2022
$5.4M
NICHD NIH HHS P30 HD003352NICHD NIH HHS P30HD03352NICHD NIH HHS P30 HD038985NICHD NIH HHS P30HD38985NIGMS NIH HHS 2T32GM008111NIGMS NIH HHS T32 GM008111NINDS NIH HHS P01 NS042803NINDS NIH HHS P01NS42803
6 · The paper itself

Abstract

Alexander disease (AxD) is a usually fatal astrogliopathy primarily caused by mutations in the gene encoding glial fibrillary acidic protein (GFAP), an intermediate filament protein expressed in astrocytes. We describe three patients with unique characteristics, and whose mutations have implications for AxD diagnosis and studies of intermediate filaments. Patient 1 is the first reported case with a noncoding mutation. The patient has a splice site change producing an in-frame deletion of exon 4 in about 10% of the transcripts. Patient 2 has an insertion and deletion at the extreme end of the coding region, resulting in a short frameshift. In addition, the mutation was found in buccal DNA but not in blood DNA, making this patient the first reported chimera. Patient 3 has a single-base deletion near the C-terminal end of the protein, producing a short frameshift. These findings recommend inclusion of intronic splice site regions in genetic testing for AxD, indicate that alteration of only a small fraction of GFAP can produce disease, and provide caution against tagging intermediate filaments at their C-terminal end for cell biological investigations.

Indexed as

AdultAlexander DiseaseAstrocytesFemaleFrameshift MutationGlial Fibrillary Acidic ProteinHumansInfantInfant, NewbornMaleMutationRNA SplicingGlial Fibrillary Acidic Protein

Identifiers

PMID22488673
PMCPMC3674965
OpenAlexW2159108309

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.