Evidence map›Paper›PMID 22486438›Full record

ArticleAlcoholism, clinical and experimental research2012

Rapid temporal changes in the expression of a set of neuromodulatory genes during alcohol withdrawal in the dorsal vagal complex: molecular evidence of homeostatic disturbance.

Kate Freeman, Mary M Staehle, Zeynep H Gümüş, Rajanikanth Vadigepalli, Gregory E Gonye, Carmen N Nichols, Babatunde A Ogunnaike, Jan B Hoek, James S Schwaber

Abstract read
In one paragraph

Article in Alcoholism, clinical and experimental research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.8field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Kate FreemanDepartment of Pathology, Anatomy and Cell Biology, Daniel Baugh Institute for Functional Genomics and Computational Biology, Thomas Jefferson University Philadelphia, Philadelphia, PA 19107, USA.
Mary M Staehle
Zeynep H Gümüş
Rajanikanth Vadigepalli
Gregory E Gonye
Carmen N Nichols
Babatunde A Ogunnaike
Jan B Hoek
James S Schwaber
Thomas Jefferson University · USCornell University · USUniversity of Delaware · US

Funding

Alcohol Tissue InjuryT32AA007463 · NIAAA · THOMAS JEFFERSON UNIVERSITY · PI HOEK, JOANNES B, VADIGEPALLI, RAJANIKANTH · 1985 to 2021
$9.1M
Modeling Central Autonomic Regulatory Network Adaptation to HypertensionR01HL111621 · NHLBI · THOMAS JEFFERSON UNIVERSITY · PI SCHWABER, JAMES, VADIGEPALLI, RAJANIKANTH · 2012 to 2015
$2.4M
Core Facilities to Support Alcohol Research.R24AA014986 · NIAAA · THOMAS JEFFERSON UNIVERSITY · PI HOEK, JOANNES B · 2005 to 2010
$2.4M
Integrated Signaling and Transcriptional Networks in Circadian Clock NeuronsR01GM076495 · NIGMS · THOMAS JEFFERSON UNIVERSITY · PI SCHWABER, JAMES · 2007 to 2010
$2.1M
Mechanisms of Central Autonomic Orchestration of Blood PressureR33HL087361 · NHLBI · THOMAS JEFFERSON UNIVERSITY · PI SCHWABER, JAMES · 2006 to 2008
$1.8M
Integrated Modeling of Adaptive Neuronal RegulationR01GM083108 · NIGMS · THOMAS JEFFERSON UNIVERSITY · PI SCHWABER, JAMES, VADIGEPALLI, RAJANIKANTH · 2009 to 2012
$1.5M
Modeling Gene Networks in Neuronal Adaptation to AlcoholR01AA015601 · NIAAA · THOMAS JEFFERSON UNIVERSITY · PI SCHWABER, JAMES · 2006 to 2009
$1.4M
Mentoring Junior Investigators in Alcohol ResearchK05AA017261 · NIAAA · THOMAS JEFFERSON UNIVERSITY · PI HOEK, JOANNES B · 2008 to 2012
$1.1M
Mechanisms of Central Autonomic Orchestration of Blood PressureR33HL088283 · NHLBI · THOMAS JEFFERSON UNIVERSITY · PI VADIGEPALLI, RAJANIKANTH · 2006 to 2008
$846k
Microarray Profiles of Alcohol's Effects on CNSR01AA013204 · NIAAA · THOMAS JEFFERSON UNIVERSITY · PI SCHWABER, JAMES · 2001 to 2003
$668k
NHLBI NIH HHS R01 HL111621NHLBI NIH HHS R33 HL087361NHLBI NIH HHS R33 HL088283NIAAA NIH HHS K05 AA017261NIAAA NIH HHS R01 AA013204NIAAA NIH HHS R01 AA015601NIAAA NIH HHS R24 AA014986NIAAA NIH HHS T32 AA007463NIGMS NIH HHS R01 GM076495NIGMS NIH HHS R01 GM083108
6 · The paper itself

Abstract

backgroundChronic alcohol exposure produces neuroadaptation, which increases the risk of cellular excitotoxicity and autonomic dysfunction during withdrawal. The temporal progression and regulation of the gene expression that contributes to this physiologic and behavioral phenotype is poorly understood early in the withdrawal period. Further, it is unexplored in the dorsal vagal complex (DVC), a brainstem autonomic regulatory structure.

methodsWe use a quantitative polymerase chain reaction platform to precisely and simultaneously measure the expression of 145 neuromodulatory genes in more than 100 rat DVC samples from control, chronically alcohol-exposed, and withdrawn rats. To gain insight into the dynamic progression and regulation of withdrawal, we focus on the expression of a subset of functionally relevant genes during the first 48 hours, when behavioral symptoms are most severe.

resultsIn the DVC, expression of this gene subset is essentially normal in chronically alcohol-exposed rats. However, withdrawal results in rapid, large-magnitude expression changes in this group. We observed differential regulation in 86 of the 145 genes measured (59%), some as early as 4 hours into withdrawal. Time series measurements (4, 8, 18, 32, and 48 hours after alcohol removal) revealed dynamic expression responses in immediate early genes, γ-aminobutyric acid type A, ionotropic glutamate, and G-protein coupled receptors and the Ras/Raf signaling pathway. Together, these changes elucidate a complex, temporally coordinated response that involves correlated expression of many functionally related groups. In particular, the expression patterns of Gabra1, Grin2a, Grin3a, and Grik3 were tightly correlated. These receptor subunits share overrepresented transcription factor binding sites for Pax-8 and other transcription factors, suggesting a common regulatory mechanism and a role for these transcription factors in the regulation of neurotransmission within the first 48 hours of alcohol withdrawal.

conclusionsExpression in this gene set is essentially normal in the alcohol-adapted DVC, but withdrawal results in immediate, large-magnitude, and dynamic changes. These data support both increased research focus on the biological ramifications of alcohol withdrawal and enable novel insights into the dynamic withdrawal expression response in this understudied homeostatic control center.

Indexed as

Gene Expression ProfilingAlcohol DrinkingAnimalsGene Regulatory NetworksHomeostasisMaleNeurotransmitter AgentsRatsRats, Sprague-DawleySubstance Withdrawal SyndromeTime FactorsVagus NerveNeurotransmitter Agents

Identifiers

PMID22486438
PMCPMC4419739
OpenAlexW2025958738

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.