Evidence map›Paper›PMID 22484319›Full record

ArticleNature structural & molecular biology2012

Crystal structure of a group II intron in the pre-catalytic state.

Russell T Chan, Aaron R Robart, Kanagalaghatta R Rajashankar, Anna Marie Pyle, Navtej Toor

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
  2. Article
  3. Scaffold-enabled high-resolution cryo-EM structure determination of RNA.bioRxiv : the preprint server for biology · 2024
    Article
  4. General Strategies for RNA X-ray Crystallography.Molecules (Basel, Switzerland) · 2023
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Optimal molecular crowding accelerates group II intron folding and maximizes catalysis.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. RNA folding: A clear path to RNA catalysis.Nature chemical biology · 2015
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Russell T ChanDepartment of Chemistry and Biochemistry, University of California, San Diego, San Diego, California, USA.
Aaron R Robart
Kanagalaghatta R Rajashankar
Anna Marie Pyle
Navtej Toor

Funding

GENETIC MECHANISMS AND REGULATIONT32GM007240 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMPTON, RANDOLPH Y. · 1985 to 2019
$23.8M
Structural Biology of RNA SplicingR01GM102216 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TOOR, NAVTEJ SINGH · 2012 to 2016
$1.5M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM102216NIGMS NIH HHS T32 GM007240NIGMS NIH HHS T32GM007240
6 · The paper itself

Abstract

Group II introns are self-splicing catalytic RNAs that are thought to be ancestral to the spliceosome. Here we report the 3.65-Å crystal structure of the group II intron from Oceanobacillus iheyensis in the pre-catalytic state. The structure reveals the conformation of the 5' splice site in the catalytic core and represents the first structure of an intron prior to the first step of splicing.

Indexed as

BacillaceaeCrystallography, X-RayModels, MolecularNucleic Acid ConformationRNA, BacterialRNA, CatalyticRNA Splice SitesRNA, BacterialRNA, CatalyticRNA Splice Sites

Identifiers

PMID22484319
PMCPMC3670821

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.