ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2012
Simple sequence repeat marker development from bacterial artificial chromosome end sequences and expressed sequence tags of flax (Linum usitatissimum L.).
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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17 citing papers in PubMed, 47 citations in OpenAlex.
- Genome Editing Approaches in Flax (International journal of molecular sciences · 2026Review
- Review
- Mapping QTLs for3 Biotech · 2021Article
- Mapping Quantitative Trait Loci onto Chromosome-Scale Pseudomolecules in Flax.Methods and protocols · 2020Article
- Genome-Wide Association Analysis of Mucilage and Hull Content in Flax (International journal of molecular sciences · 2018Article
- QTL mapping and molecular characterization of the classical D locus controlling seed and flower color in Linum usitatissimum (flax).Scientific reports · 2017Article
- Genetic diversity, population structure and association analysis in linseed (Physiology and molecular biology of plants : an international journal of functional plant biology · 2017Article
- Development of Novel SSR Markers for Flax (Frontiers in plant science · 2016Article
- Association mapping of seed quality traits using the Canadian flax (Linum usitatissimum L.) core collection.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2014Article
- Use of EST-SSR markers for evaluating genetic diversity and fingerprinting celery (Apium graveolens L.) cultivars.Molecules (Basel, Switzerland) · 2014Article
- Genome-wide microsatellite characterization and marker development in the sequenced Brassica crop species.DNA research : an international journal for rapid publication of reports on genes and genomes · 2014Article
- Genomic regions underlying agronomic traits in linseed (Linum usitatissimum L.) as revealed by association mapping.Journal of integrative plant biology · 2014Article
- Development of SSR markers by next-generation sequencing of Korean landraces of chamoe (Cucumis melo var. makuwa).Molecular biology reports · 2013Article
- Genetic characterization of a core collection of flax (Linum usitatissimum L.) suitable for association mapping studies and evidence of divergent selection between fiber and linseed types.BMC plant biology · 2013Article
- Outlier Loci and Selection Signatures of Simple Sequence Repeats (SSRs) in Flax (Plant molecular biology reporter · 2013Article
- Genome wide SNP discovery in flax through next generation sequencing of reduced representation libraries.BMC genomics · 2012Article
- Integrated consensus genetic and physical maps of flax (Linum usitatissimum L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012Article
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Authors and funding
10 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Flax is an important oilseed crop in North America and is mostly grown as a fibre crop in Europe. As a self-pollinated diploid with a small estimated genome size of ~370 Mb, flax is well suited for fast progress in genomics. In the last few years, important genetic resources have been developed for this crop. Here, we describe the assessment and comparative analyses of 1,506 putative simple sequence repeats (SSRs) of which, 1,164 were derived from BAC-end sequences (BESs) and 342 from expressed sequence tags (ESTs). The SSRs were assessed on a panel of 16 flax accessions with 673 (58 %) and 145 (42 %) primer pairs being polymorphic in the BESs and ESTs, respectively. With 818 novel polymorphic SSR primer pairs reported in this study, the repertoire of available SSRs in flax has more than doubled from the combined total of 508 of all previous reports. Among nucleotide motifs, trinucleotides were the most abundant irrespective of the class, but dinucleotides were the most polymorphic. SSR length was also positively correlated with polymorphism. Two dinucleotide (AT/TA and AG/GA) and two trinucleotide (AAT/ATA/TAA and GAA/AGA/AAG) motifs and their iterations, different from those reported in many other crops, accounted for more than half of all the SSRs and were also more polymorphic (63.4 %) than the rest of the markers (42.7 %). This improved resource promises to be useful in genetic, quantitative trait loci (QTL) and association mapping as well as for anchoring the physical/genetic map with the whole genome shotgun reference sequence of flax.
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