ArticleStructure (London, England : 1993)2012
Detection of spatial correlations in protein structures and molecular complexes.
Article in Structure (London, England : 1993), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
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Who cites it
28 citing papers in PubMed.
- Structural Bioinformatics and Deep Learning of Metalloproteins: Recent Advances and Applications.International journal of molecular sciences · 2022Review
- Identification of alternative protein targets of glutamate-ureido-lysine associated with PSMA tracer uptake in prostate cancer cells.Proceedings of the National Academy of Sciences of the United States of America · 2022Article
- Quantifying structural relationships of metal-binding sites suggests origins of biological electron transfer.Science advances · 2022Article
- PDB-wide identification of physiological hetero-oligomeric assemblies based on conserved quaternary structure geometry.Structure (London, England : 1993) · 2021Article
- TopMatch-web: pairwise matching of large assemblies of protein and nucleic acid chains in 3D.Nucleic acids research · 2020Article
- Real time structural search of the Protein Data Bank.PLoS computational biology · 2020Article
- CCDC61/VFL3 Is a Paralog of SAS6 and Promotes Ciliary Functions.Structure (London, England : 1993) · 2020Article
- Broadly Neutralizing Bovine Antibodies: Highly Effective New Tools against Evasive Pathogens?Viruses · 2020Review
- The Contribution of the Ankyrin Repeat Domain of TRPV1 as a Thermal Module.Biophysical journal · 2020Article
- The SCOP database in 2020: expanded classification of representative family and superfamily domains of known protein structures.Nucleic acids research · 2020Article
- The Site-Specific Amino Acid Preferences of Homologous Proteins Depend on Sequence Divergence.Genome biology and evolution · 2019Article
- Circular Permutation Obscures Universality of a Ribosomal Protein.Journal of molecular evolution · 2018Article
- PDB-wide identification of biological assemblies from conserved quaternary structure geometry.Nature methods · 2018Article
- Structural and functional mapping of Rtg2p determinants involved in retrograde signaling and aging of Saccharomyces cerevisiae.PloS one · 2017Article
- Structural principles for computational and de novo design of 4Fe-4S metalloproteins.Biochimica et biophysica acta · 2016Review
- Evolutionary relationships between heme-binding ferredoxin α + β barrels.BMC bioinformatics · 2016Article
- Efficient and automated large-scale detection of structural relationships in proteins with a flexible aligner.BMC bioinformatics · 2016Article
- BCSearch: fast structural fragment mining over large collections of protein structures.Nucleic acids research · 2015Article
- Frustration in biomolecules.Quarterly reviews of biophysics · 2014Review
- Structure-based characterization of multiprotein complexes.Structure (London, England : 1993) · 2014Article
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Authors and funding
2 authors.
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Abstract
Protein structures are frequently related by spectacular and often surprising similarities. Structural correlations among protein chains are routinely detected by various structure-matching techniques, but the comparison of oligomers and molecular complexes is largely uncharted territory. Here we solve the structure-matching problem for oligomers and large molecular aggregates, including the largest molecular complexes known today. We provide several challenging examples that cannot be handled by conventional structure-matching techniques and we report on a number of remarkable correlations. The examples cover the cell-puncturing device of bacteriophage T4, the secretion system of P. aeruginosa, members of the dehydrogenase family, DNA clamps, ferredoxin iron-storage cages, and virus capsids.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.