Evidence map›Paper›PMID 22481888›Full record

ArticleGenetics and molecular biology2012

Xylella fastidiosa comparative genomic database is an information resource to explore the annotation, genomic features, and biology of different strains.

Alessandro M Varani, Claudia B Monteiro-Vitorello, Luiz G P de Almeida, Rangel C Souza, Oberdan L Cunha, Wanessa C Lima, Edwin Civerolo, Marie-Anne Van Sluys, Ana T R Vasconcelos

Abstract read
In one paragraph

Article in Genetics and molecular biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Alessandro M VaraniGenome and Transposable Elements Laboratory, Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, São Paulo, SP, Brazil.
Claudia B Monteiro-Vitorello
Luiz G P de Almeida
Rangel C Souza
Oberdan L Cunha
Wanessa C Lima
Edwin Civerolo
Marie-Anne Van Sluys
Ana T R Vasconcelos

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Xylella fastidiosa comparative genomic database is a scientific resource with the aim to provide a user-friendly interface for accessing high-quality manually curated genomic annotation and comparative sequence analysis, as well as for identifying and mapping prophage-like elements, a marked feature of Xylella genomes. Here we describe a database and tools for exploring the biology of this important plant pathogen. The hallmarks of this database are the high quality genomic annotation, the functional and comparative genomic analysis and the identification and mapping of prophage-like elements. It is available from web site http://www.xylella.lncc.br.

Indexed as

comparative genomicsgenome annotation and assemblymobile genetic elements

Identifiers

PMID22481888
PMCPMC3313504

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.