Evidence map›Paper›PMID 22481122›Full record

ArticleCurrent genetics2012

Genome-wide analysis of cell wall-related genes in Tuber melanosporum.

Raffaella Balestrini, Fabiano Sillo, Annegret Kohler, Georg Schneider, Antonella Faccio, Emilie Tisserant, Francis Martin, Paola Bonfante

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Current genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
6.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 30 citations in OpenAlex.

  1. Review
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  8. Review
  9. Expanding genomics of mycorrhizal symbiosis.Frontiers in microbiology · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 4 countries.

Raffaella BalestriniIstituto per la Protezione delle Piante del CNR, UOS Torino, Viale Mattioli, 25, 10125, Turin, Italy. r.balestrini@ipp.cnr.it
Fabiano Sillo
Annegret Kohler
Georg Schneider
Antonella Faccio
Emilie Tisserant
Francis Martin
Paola Bonfante
Interactions Arbres-Microorganismes · FRIstituto per le Piante da Legno e l'Ambiente · ITBioinformatics Institute · SGCentro di Ricerca per la Patologia Vegetale · ITInstitute for Sustainable Plant Protection · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A genome-wide inventory of proteins involved in cell wall synthesis and remodeling has been obtained by taking advantage of the recently released genome sequence of the ectomycorrhizal Tuber melanosporum black truffle. Genes that encode cell wall biosynthetic enzymes, enzymes involved in cell wall polysaccharide synthesis or modification, GPI-anchored proteins and other cell wall proteins were identified in the black truffle genome. As a second step, array data were validated and the symbiotic stage was chosen as the main focus. Quantitative RT-PCR experiments were performed on 29 selected genes to verify their expression during ectomycorrhizal formation. The results confirmed the array data, and this suggests that cell wall-related genes are required for morphogenetic transition from mycelium growth to the ectomycorrhizal branched hyphae. Labeling experiments were also performed on T. melanosporum mycelium and ectomycorrhizae to localize cell wall components.

Indexed as

Genome, FungalAscomycotaCell WallFungal ProteinsGene Expression ProfilingGene Expression Regulation, FungalGenomicsGlucansPhylogenyReproducibility of ResultsFungal ProteinsGlucans

Identifiers

PMID22481122
OpenAlexW2093374062

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.