ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2012
Impact of selective genotyping in the training population on accuracy and bias of genomic selection.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
18 citing papers in PubMed.
- Transferability of genomic prediction models across market segments in potato and the effect of selection.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- The Effect of Preselection on the Level of Bias and Accuracy in a Broiler Breeder Population, a Simulation Study.Journal of animal breeding and genetics = Zeitschrift fur Tierzuchtung und Zuchtungsbiologie · 2025Article
- Maximizing efficiency in sunflower breeding through historical data optimization.Plant methods · 2024Article
- Genomic prediction reveals unexplored variation in grain protein and lysine content across a vast winter wheat genebank collection.Frontiers in plant science · 2023Article
- Genomic selection of parents and crosses beyond the native gene pool of a breeding program.The plant genome · 2021Article
- Selective genotyping and phenotypic data inclusion strategies of crossbred progeny for combined crossbred and purebred selection in swine breeding.Journal of animal science · 2021Article
- Enhancing Genetic Gain through Genomic Selection: From Livestock to Plants.Plant communications · 2020Review
- Simultaneous improvement of grain yield and protein content in durum wheat by different phenotypic indices and genomic selection.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018Article
- Improving the baking quality of bread wheat by genomic selection in early generations.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018Article
- The Value of Expanding the Training Population to Improve Genomic Selection Models in Tetraploid Potato.Frontiers in plant science · 2018Article
- Genomic assisted selection for enhancing line breeding: merging genomic and phenotypic selection in winter wheat breeding programs with preliminary yield trials.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- Genomic selection in a commercial winter wheat population.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016Article
- Article
- Genomic selection in sugar beet breeding populations.BMC genetics · 2013Article
- Review
- The genetic architecture of maize stalk strength.PloS one · 2013Article
- Effectiveness of genomic prediction of maize hybrid performance in different breeding populations and environments.G3 (Bethesda, Md.) · 2012Article
- Potential of marker selection to increase prediction accuracy of genomic selection in soybean (Molecular breeding : new strategies in plant improvementArticle
Corrections and comments
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Estimating marker effects based on routinely generated phenotypic data of breeding programs is a cost-effective strategy to implement genomic selection. Truncation selection in breeding populations, however, could have a strong impact on the accuracy to predict genomic breeding values. The main objective of our study was to investigate the influence of phenotypic selection on the accuracy and bias of genomic selection. We used experimental data of 788 testcross progenies from an elite maize breeding program. The testcross progenies were evaluated in unreplicated field trials in ten environments and fingerprinted with 857 SNP markers. Random regression best linear unbiased prediction method was used in combination with fivefold cross-validation based on genotypic sampling. We observed a substantial loss in the accuracy to predict genomic breeding values in unidirectional selected populations. In contrast, estimating marker effects based on bidirectional selected populations led to only a marginal decrease in the prediction accuracy of genomic breeding values. We concluded that bidirectional selection is a valuable approach to efficiently implement genomic selection in applied plant breeding programs.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.