ArticleFrontiers in zoology2012
TINA manual landmarking tool: software for the precise digitization of 3D landmarks.
Article in Frontiers in zoology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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Who cites it
13 citing papers in PubMed.
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- Dedicated transcriptomics combined with power analysis lead to functional understanding of genes with weak phenotypic changes in knockout lines.PLoS computational biology · 2020Article
- Evolution of a complex phenotype with biphasic ontogeny: Contribution of development versus function and climatic variation to skull modularity in toads.Ecology and evolution · 2017Article
- The Role of Alternative Splicing and Differential Gene Expression in Cichlid Adaptive Radiation.Genome biology and evolution · 2017Article
- A population level atlas of Mus musculus craniofacial skeleton and automated image-based shape analysis.Journal of anatomy · 2017Article
- High evolutionary constraints limited adaptive responses to past climate changes in toad skulls.Proceedings. Biological sciences · 2016Article
- Craniofacial shape transition across the house mouse hybrid zone: implications for the genetic architecture and evolution of between-species differences.Development genes and evolution · 2016Article
- Mapping of Craniofacial Traits in Outbred Mice Identifies Major Developmental Genes Involved in Shape Determination.PLoS genetics · 2015Article
- Landmark precision and reliability and accuracy of linear distances estimated by using 3D computed micro-tomography and the open-source TINA Manual Landmarking Tool software.Frontiers in zoology · 2015Article
- Contribution of the maxillary sinus to the modularity and variability of nasal cavity shape in Japanese macaques.Primates; journal of primatology · 2015Article
- Exploring the effects of gene dosage on mandible shape in mice as a model for studying the genetic basis of natural variation.Development genes and evolution · 2013Article
- Quantitative shape analysis with weighted covariance estimates for increased statistical efficiency.Frontiers in zoology · 2013Article
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundInterest in the placing of landmarks and subsequent morphometric analyses of shape for 3D data has increased with the increasing accessibility of computed tomography (CT) scanners. However, current computer programs for this task suffer from various practical drawbacks. We present here a free software tool that overcomes many of these problems.
resultsThe TINA Manual Landmarking Tool was developed for the digitization of 3D data sets. It enables the generation of a modifiable 3D volume rendering display plus matching orthogonal 2D cross-sections from DICOM files. The object can be rotated and axes defined and fixed. Predefined lists of landmarks can be loaded and the landmarks identified within any of the representations. Output files are stored in various established formats, depending on the preferred evaluation software.
conclusionsThe software tool presented here provides several options facilitating the placing of landmarks on 3D objects, including volume rendering from DICOM files, definition and fixation of meaningful axes, easy import, placement, control, and export of landmarks, and handling of large datasets. The TINA Manual Landmark Tool runs under Linux and can be obtained for free from http://www.tina-vision.net/tarballs/.
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