Evidence map›Paper›PMID 22479419›Full record

ArticlePloS one2012

Genome-wide association study of treatment refractory schizophrenia in Han Chinese.

Ying-Jay Liou, Hui-Hung Wang, Ming-Ta Michael Lee, Sheng-Chang Wang, Hung-Lun Chiang, Cheng-Chung Chen, Ching-Hua Lin, Ming-Shun Chung, Chien-Cheng Kuo, Ding-Lieh Liao and 13 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 3 pooled it
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 3 syntheses or guidelines pooled it, 62 citations in OpenAlex.

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  11. The Potential Role of Regulatory Genes (Frontiers in genetics · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 11 institutions in 2 countries.

Ying-Jay LiouDepartment of Psychiatry, Taipei Veterans General Hospital, Taipei, Taiwan.
Hui-Hung Wang
Ming-Ta Michael Lee
Sheng-Chang Wang
Hung-Lun Chiang
Cheng-Chung Chen
Ching-Hua Lin
Ming-Shun Chung
Chien-Cheng Kuo
Ding-Lieh Liao
Ching-Kuan Wu
Chih-Min Liu
Yu-Li Liu
Hai-Gwo Hwu
I-Ching Lai
Shih-Jen Tsai
Chia-Hsiang Chen
Hui-Fen Liu
Yi-Chun Chou
Chien-Hsiun Chen
Yuan-Tsong Chen
Chen-Jee Hong
Jer-Yuarn Wu
Institute of Biomedical Sciences, Academia Sinica · TWNational Health Research Institutes · TWJianan Mental Hospital · TWNational Taiwan University Hospital · TWNational Yang Ming Chiao Tung University · TWNational Yang Ming University Hospital · TWBali Psychiatric Center · TWChina Medical University · TWDuke Medical Center · USKaohsiung Municipal Kai-Syuan Psychiatric Hospital · TWYuli Veterans Hospital · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We report the first genome-wide association study of a joint analysis using 795 Han Chinese individuals with treatment-refractory schizophrenia (TRS) and 806 controls. Three loci showed suggestive significant association with TRS were identified. These loci include: rs10218843 (P = 3.04 × 10(-7)) and rs11265461 (P = 1.94 × 10(-7)) are adjacent to signaling lymphocytic activation molecule family member 1 (SLAMF1); rs4699030 (P = 1.94 × 10(-6)) and rs230529 (P = 1.74 × 10(-7)) are located in the gene nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (NFKB1); and rs13049286 (P = 3.05 × 10(-5)) and rs3827219 (P = 1.66 × 10(-5)) fall in receptor-interacting serine/threonine-protein kinase 4 (RIPK4). One isolated single nucleotide polymorphism (SNP), rs739617 (P = 3.87 × 10(-5)) was also identified to be associated with TRS. The -94delATTG allele (rs28362691) located in the promoter region of NFKB1 was identified by resequencing and was found to associate with TRS (P = 4.85 × 10(-6)). The promoter assay demonstrated that the -94delATTG allele had a significant lower promoter activity than the -94insATTG allele in the SH-SY5Y cells. This study suggests that rs28362691 in NFKB1 might be involved in the development of TRS.

Indexed as

AdultAgedAsian PeopleCell LineFemaleGenome-Wide Association StudyHumansLinkage DisequilibriumMaleMiddle AgedNF-kappa B p50 SubunitPolymorphism, Single NucleotideSchizophreniaTaiwanNF-kappa B p50 SubunitNFKB1 protein, human

Identifiers

PMID22479419
PMCPMC3313922
OpenAlexW2086869274

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.