Evidence map›Paper›PMID 22479184›Full record

ArticlePLoS pathogens2012

Virulence regulator EspR of Mycobacterium tuberculosis is a nucleoid-associated protein.

Benjamin Blasco, Jeffrey M Chen, Ruben Hartkoorn, Claudia Sala, Swapna Uplekar, Jacques Rougemont, Florence Pojer, Stewart T Cole

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
7.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 139 citations in OpenAlex.

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  14. Phase variation as a major mechanism of adaptation inProceedings of the National Academy of Sciences of the United States of America · 2023
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  15. Genome-wide screen identifies host loci that modulatebioRxiv : the preprint server for biology · 2023
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  16. Frontiers in immunology · 2023
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  17. Article
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10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Benjamin BlascoGlobal Health Institute, Ecole Polytechnique Fédérale de Lausanne-EPFL, Lausanne, Switzerland.
Jeffrey M Chen
Ruben Hartkoorn
Claudia Sala
Swapna Uplekar
Jacques Rougemont
Florence Pojer
Stewart T Cole
École Polytechnique Fédérale de Lausanne · CHSIB Swiss Institute of Bioinformatics · CH

Funding

CIHRNIAID NIH HHS HHSN266200400091C
6 · The paper itself

Abstract

The principal virulence determinant of Mycobacterium tuberculosis (Mtb), the ESX-1 protein secretion system, is positively controlled at the transcriptional level by EspR. Depletion of EspR reportedly affects a small number of genes, both positively or negatively, including a key ESX-1 component, the espACD operon. EspR is also thought to be an ESX-1 substrate. Using EspR-specific antibodies in ChIP-Seq experiments (chromatin immunoprecipitation followed by ultra-high throughput DNA sequencing) we show that EspR binds to at least 165 loci on the Mtb genome. Included in the EspR regulon are genes encoding not only EspA, but also EspR itself, the ESX-2 and ESX-5 systems, a host of diverse cell wall functions, such as production of the complex lipid PDIM (phenolthiocerol dimycocerosate) and the PE/PPE cell-surface proteins. EspR binding sites are not restricted to promoter regions and can be clustered. This suggests that rather than functioning as a classical regulatory protein EspR acts globally as a nucleoid-associated protein capable of long-range interactions consistent with a recently established structural model. EspR expression was shown to be growth phase-dependent, peaking in the stationary phase. Overexpression in Mtb strain H37Rv revealed that EspR influences target gene expression both positively or negatively leading to growth arrest. At no stage was EspR secreted into the culture filtrate. Thus, rather than serving as a specific activator of a virulence locus, EspR is a novel nucleoid-associated protein, with both architectural and regulatory roles, that impacts cell wall functions and pathogenesis through multiple genes.

Indexed as

Bacterial ProteinsDNA, BacterialDNA-Binding ProteinsGenes, RegulatorHomeodomain ProteinsHumansMycobacterium tuberculosisRepressor ProteinsVirulenceVirulence FactorsBacterial ProteinsDNA, BacterialDNA-Binding ProteinsESX1 protein, humanH-NS protein, bacteriaHomeodomain ProteinsRepressor ProteinsVirulence Factors

Identifiers

PMID22479184
PMCPMC3315491
OpenAlexW2033560237

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.