Evidence map›Paper›PMID 22476155›Full record

ArticleGenes and immunity2012

A functional haplotype of UBE2L3 confers risk for systemic lupus erythematosus.

S Wang, I Adrianto, G B Wiley, C J Lessard, J A Kelly, A J Adler, S B Glenn, A H Williams, J T Ziegler, M E Comeau and 40 more

Open access · bronzeAbstract read
In one paragraph

Article in Genes and immunity, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 62 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Immunogenetics of Lupus Erythematosus.Advances in experimental medicine and biology · 2022
    Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Updates in Lupus Genetics.Current rheumatology reports · 2017
    Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

50 authors at 20 institutions in 7 countries.

S WangArthritis and Clinical Immunology Research Program, Oklahoma Medical Research Foundation, Oklahoma City, OK, USA.
I Adrianto
G B Wiley
C J Lessard
J A Kelly
A J Adler
S B Glenn
A H Williams
J T Ziegler
M E Comeau
M C Marion
B E Wakeland
C Liang
K M Kaufman
J M Guthridge
M E Alarcón-Riquelme
BIOLUPUS and GENLES Networks
G S Alarcón
J-M Anaya
S-C Bae
J-H Kim
Y B Joo
S A Boackle
E E Brown
M A Petri
R Ramsey-Goldman
J D Reveille
L M Vilá
L A Criswell
J C Edberg
B I Freedman
G S Gilkeson
C O Jacob
J A James
D L Kamen
R P Kimberly
J Martin
J T Merrill
T B Niewold
B A Pons-Estel
R H Scofield
A M Stevens
B P Tsao
T J Vyse
C D Langefeld
J B Harley
E K Wakeland
K L Moser
C G Montgomery
P M Gaffney
Oklahoma Medical Research Foundation · USWake Forest University · USHanyang University Seoul Hospital · KRUniversity of Alabama at Birmingham · USMedical University of South Carolina · USCincinnati Children's Hospital Medical Center · USNorthwestern University · USUniversity of California, Los Angeles · USUniversity of Oklahoma Health Sciences Center · USCentro Científico Tecnólogico - Rosario · ARConsejo Superior de Investigaciones Científicas · ESJohns Hopkins University · USKing's College London · GBThe University of Texas Southwestern Medical Center · USUnited States Department of Veterans Affairs · USUniversidad del Rosario · COUniversity of California, San Francisco · USUniversity of Chicago · USUniversity of Puerto Rico, Medical Sciences Campus · PRUniversity of Southern California · US

Funding

University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune SystemsP30CA046934 · NCI · UNIVERSITY OF COLORADO DENVER · PI James V Degregori · 1988 to 2026
$117.0M
Institute for Clinical and Translational Research (UL1)UL1RR025005 · NCRR · JOHNS HOPKINS UNIVERSITY · PI FORD, DANIEL ERNEST · 2007 to 2011
$75.8M
INSTITUTE FOR TRANSLATIONAL HEALTH SCIENCE (UL1): BPCAUL1RR025014 · NCRR · UNIVERSITY OF WASHINGTON · PI DISIS, MARY L. · 2007 to 2011
$51.5M
U OF TEXAS HLTH SCI CTR HOUSTON CENTER FOR CLINICAL AND TRANSLATIONAL SCIENCESUL1RR024148 · NCRR · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MCPHERSON, DAVID D · 2006 to 2010
$27.9M
ZD1839 FOR MALIGNANT ASTROCYTOMA OR GLIOBLASTOMA AND MENINGIOMAM01RR000079 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KESSLER, DAVID A · 1985 to 2006
$26.0M
TRANSLATIONAL RESEARCH UNIVERSITY OF CHICAGO: CLINICAL TRIALSUL1RR024999 · NCRR · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2007 to 2011
$25.3M
MULTIDISCIPLINARY CLINICAL AND TRANSLATIONAL SCIENCE (MCTS) PROGRAM (UL1)UL1RR025741 · NCRR · NORTHWESTERN UNIVERSITY AT CHICAGO · PI GREENLAND, PHILIP · 2008 to 2011
$24.7M
UAB CENTER FOR CLINICAL AND TRANSLATIONAL SCIENCE (CCTS) UL1: BPCAUL1RR025777 · NCRR · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI GUAY-WOODFORD, LISA MARIE · 2008 to 2011
$22.3M
Colorado Clinical and Translational Science Institute (UL1)UL1TR000154 · NCATS · UNIVERSITY OF COLORADO DENVER · PI SOKOL, RONALD J. · 2012 to 2013
$20.4M
Program Project in the Genetics of SLEP01AR049084 · NIAMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KIMBERLY, ROBERT P. · 2002 to 2012
$12.7M
The Interplay of Sociodemographic and Genetic Factors in SLE Health DisparitiesP60AR053308 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI YELIN, EDWARD H · 2006 to 2016
$11.8M
SOUTH CAROLINA CLINICAL & TRANSLATIONAL RESEARCH INSTITUTE (SCTR)UL1RR029882 · NCRR · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI BRADY, KATHLEEN T. · 2009 to 2011
$10.1M
Arthritis Research UKNCATS NIH HHS UL1 TR000062NCATS NIH HHS UL1 TR000154NCI NIH HHS P30 CA046934NCI NIH HHS R01 CA141700NCRR NIH HHS 1U54 RR23417-01NCRR NIH HHS 5UL1 RR025777NCRR NIH HHS M01 RR000079NCRR NIH HHS M01 RR-00079NCRR NIH HHS P30 RR031152NCRR NIH HHS UL1 RR024148NCRR NIH HHS UL1 RR024999NCRR NIH HHS UL1 RR025005NCRR NIH HHS UL1 RR025014NCRR NIH HHS UL1 RR025014-02NCRR NIH HHS UL1 RR025741NCRR NIH HHS UL1 RR025777NCRR NIH HHS UL1 RR029882NIAID NIH HHS AI071651NIAID NIH HHS K08 AI083790NIAID NIH HHS K24 AI078004NIAID NIH HHS L30 AI071651NIAID NIH HHS N01 AI050026NIAID NIH HHS P01 AI083194NIAID NIH HHS R01 AI063274NIAID NIH HHS R21 AI070304NIAID NIH HHS R37 AI024717NIAID NIH HHS U19 AI082714NIAMS NIH HHS K24 AR002138NIAMS NIH HHS N01 AR062277NIAMS NIH HHS N01 AR62277NIAMS NIH HHS P01 AR049084NIAMS NIH HHS P01 AR49084NIAMS NIH HHS P30 AR048311NIAMS NIH HHS P30 AR053483NIAMS NIH HHS P30 AR48311NIAMS NIH HHS P60 2 AR30692NIAMS NIH HHS P60 AR030692NIAMS NIH HHS P60 AR049459NIAMS NIH HHS P60 AR053308NIAMS NIH HHS P60 AR062755NIAMS NIH HHS R01 AR033062NIAMS NIH HHS R01 AR042460NIAMS NIH HHS R01 AR043274NIAMS NIH HHS R01 AR043727NIAMS NIH HHS R01 AR043814NIAMS NIH HHS R01 AR051545NIAMS NIH HHS R01 AR051545-01A2NIAMS NIH HHS R01 AR056360NIAMS NIH HHS R01 AR057172NIAMS NIH HHS R01 AR063124NIAMS NIH HHS R01 AR33062NIAMS NIH HHS R01 AR43814NIAMS NIH HHS RC1 AR058554NIAMS NIH HHS RC1 AR058621NIDA NIH HHS R90 DA023417NIDCR NIH HHS R01 DE018209NIGMS NIH HHS P20 GM103456PHS HHS R37 24717Wellcome Trust
6 · The paper itself

Abstract

Systemic lupus erythematosus (SLE) is an autoimmune disease with diverse clinical manifestations characterized by the development of pathogenic autoantibodies manifesting in inflammation of target organs such as the kidneys, skin and joints. Genome-wide association studies have identified genetic variants in the UBE2L3 region that are associated with SLE in subjects of European and Asian ancestry. UBE2L3 encodes an ubiquitin-conjugating enzyme, UBCH7, involved in cell proliferation and immune function. In this study, we sought to further characterize the genetic association in the region of UBE2L3 and use molecular methods to determine the functional effect of the risk haplotype. We identified significant associations between variants in the region of UBE2L3 and SLE in individuals of European and Asian ancestry that exceeded a Bonferroni-corrected threshold (P<1 × 10(-4)). A single risk haplotype was observed in all associated populations. Individuals harboring the risk haplotype display a significant increase in both UBE2L3 mRNA expression (P=0.0004) and UBCH7 protein expression (P=0.0068). The results suggest that variants carried on the SLE-associated UBE2L3 risk haplotype influence autoimmunity by modulating UBCH7 expression.

Indexed as

Genetic Predisposition to DiseaseHaplotypesAllelesAsian PeopleBlack or African AmericanFemaleHispanic or LatinoHumansLinkage DisequilibriumLupus Erythematosus, SystemicMalePolymorphism, Single NucleotideUbiquitin-Conjugating EnzymesWhite PeopleUBE2L3 protein, humanUbiquitin-Conjugating Enzymes

Identifiers

PMID22476155
PMCPMC3411915
OpenAlexW1995539605

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.